Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0509 ATGTGTGGCGGTGCCATAATCGCTGAGTTCATTCCCCGCAACCGTTCTCGCCGACTTACTGCCTCTGAAATCTGGCCCAACACATTCTCTAACAACCAAGTCGACGACTTTGACTTCGATTTTTCTCATCATCATCTCAAAAACACACCCACTCTCAGTAAAGCTTCTTCGCCTTCAGTTGGTGAGCAAGATCAGGAGAACAGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTCTACAGAGGGATCAGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCAAGAAAAGGTGTTCGCGTTTGGCTCGGAACCTTCAACACCGCCGAAGAAGCCGCCAGGGCCTACGACAGAGAAGCTCGTAAGATTCGCGGAAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAATACTCCATTCAACAATCTCGCAATGTTATTCCAAACGTTCCTCCTCCGATTCGACGATCGAGTAATCATCCTCCTCTGTATCAATATGGTGATGCCAACAACAACAACATGAACAACCAGGCAAGGACTCTGAACCTCAACTTGGAGTTTGGTTACGATCTGAACCATGGAGGAGCCGTTGGCGTTGGTGATGCCATCAATGCAGACCCATTTGTGAGTTGTGTTGATGAGAATTCTGAGTATGGGTCTGGTTCTGGCTCGGCATCGGAGGTGGCAGGTGGGTCAAGTGGTGATCAACAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTTTCGGAGGAGCTAATGGCATATGAGAACTACATTGGGTTTTATGATCAAATGCCCTTCTATGATGCACAATCTGCTGTCGCCGCTGTCGCCGCTGCCAACAACAACAACAACGTTGTTCAGGAAAGTGTGGTTGGGGAACTTTGGACCTTCGATGAATGA 921 0.4962 MCGGAIIAEFIPRNRSRRLTASEIWPNTFSNNQVDDFDFDFSHHHLKNTPTLSKASSPSVGEQDQENSKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQQSRNVIPNVPPPIRRSSNHPPLYQYGDANNNNMNNQARTLNLNLEFGYDLNHGGAVGVGDAINADPFVSCVDENSEYGSGSGSASEVAGGSSGDQQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAVAAVAAANNNNNVVQESVVGELWTFDE* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0509 306 PANTHER DNA-BINDING DOMAIN 1 257 IPR044808 GO:0003700|GO:0009873
Amo16g0509 306 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Amo16g0509 306 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 MobiDBLite consensus disorder prediction 49 81 - -
Amo16g0509 306 MobiDBLite consensus disorder prediction 49 66 - -
Amo16g0509 306 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Amo16g0509 306 PANTHER EREBP TRANSCRIPTION FACTOR 1 257 - -
Amo16g0509 306 MobiDBLite consensus disorder prediction 219 249 - -
Amo16g0509 306 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Amo16g0509 306 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0509 Amo-Chr16 8386575 8387928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0509 1 137 AP2-EREBP Transcription Factor Family AT3G16770 55.000 4.16e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g0509 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0509 K09286 - gmx:100819416 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0509 16 8386575 8387928 Amo16g0509 16 8386575 8387928 ECH