Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0492 ATGTCTGAACCCAATGCGATCGCTGAAATCCCTCAGAACATGACCATCTACATCAACAACCTTAACGAAAAGATTAAGCTTGATGAGTTGAAGAAGTCGTTGCATGCTGTTTTCTCTCAGTTCGGGAAGATACTGGAAGTGCTAGCGTTCAAGACTCTGAAGCACAAGGGTCAAGCTTGGGTGGTGTTTGAGGATGTTAATTCTGCTTCCAATGCTCTTAGACAAATGCAAGGTTTCCCCTTCTACGATAAGCCAATGAAAATACAGTATGCAAAGACTAAATCAGATATAATAGCAAAAGCTGATGGTACCTTTGTCCCGAGAGAAAAACGGAAGAGGCATGATGACAAAGGCAAAAAACGGAAGGACCATGTTGATCCTGGTTTAGCTGGAATGGGCGTAAATCCAGCATATGCTGGTGCCTATGGTGCAGCTCCTGCTGTATCGTATCCAGGTGGTGCAAAATCTATGGTACCTGAGGCTCCTGCCCCACCAAACAATATTCTCTTCATTCAAAATCTACCCAATGAGACAACTCCCATGATGCTGCAAATGCTCTTTCTTCAATATCCTGGTTTCAAGGAAGTTAGGATGGTGGAAGCGAAGCCAGGAATTGCATTTGTGGAATATGGAGATGAGATGCAATCAACTGTAGCAATGCAGGCCCTACAAGGTTTCAAGATAACACCACATAACCCGATGTTGATAACTTATGCCAAGAAATAG 726 0.4339 MSEPNAIAEIPQNMTIYINNLNEKIKLDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVNSASNALRQMQGFPFYDKPMKIQYAKTKSDIIAKADGTFVPREKRKRHDDKGKKRKDHVDPGLAGMGVNPAYAGAYGAAPAVSYPGGAKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQALQGFKITPHNPMLITYAKK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0492 241 CDD RRM1_U1A_like 15 92 - -
Amo16g0492 241 SUPERFAMILY RNA-binding domain, RBD 12 230 IPR035979 GO:0003676
Amo16g0492 241 CDD RRM2_U1A_like 165 237 - -
Amo16g0492 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 241 IPR000504 GO:0003723
Amo16g0492 241 Gene3D - 155 241 IPR012677 -
Amo16g0492 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 93 IPR000504 GO:0003723
Amo16g0492 241 MobiDBLite consensus disorder prediction 107 129 - -
Amo16g0492 241 Gene3D - 8 102 IPR012677 -
Amo16g0492 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 7 241 - -
Amo16g0492 241 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 7 241 - -
Amo16g0492 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 229 IPR000504 GO:0003723
Amo16g0492 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 86 IPR000504 GO:0003723
Amo16g0492 241 SMART rrm1_1 168 237 IPR000504 GO:0003723
Amo16g0492 241 SMART rrm1_1 15 89 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0492 Amo-Chr16 8158573 8161839 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0492 3 96 Eukaryotic Initiation Factors Gene Family AT4G34110 30.208 2.46e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0492 K11091 - gmx:100777062 412.149