Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0473 ATGTATAACCTCACCAGAAGAAGAACAGCACTATTGCTGTCTCTTTTCCTTGTAAACATCATCATCACAAAAGCAACAGCATCTGATGAAAAAGAAGCACACATCCAAGTAGCAGAGTCAGCATGCGAAGGAACATTCTACCGAGACCTCTGCGTCTCAACTGTCTCCACATTCCCCGATCTCGCATCCAAATCCCTCCCACAAACGATATGCTCTCTCCTCAACCACACCGTCGGCGAGGTCACTTCATCTTCCTACAACTGCACCGGACTCAGGAAGGGTCTCCGAAACCTCAGCACCATGGAGAAACGTGCCCTCGACGACTGCATCGCCTTGTTCGACGACACCCGCACGGAGCTCGCCACCACCATCTCCGATCTCAACCAGACCACAATACCCAGCAGGCGCCACCACGACTCGCAGACTCTTCTGAGTGCAGCCATGACCAACTTGTACACGTGTCTCGATGGCTTCGCTTACTGCAAGGGGAGTCACGTGAGGGAAAGGTACCTGCAGGACAAGTTGTTTCAGATTTCTAATCATGTTAGTAACTCCCTCGCCATGCTCAAGAAGGTTCCCGGAGTGAAGAAGCCTTCCAAATCGGAGGTCTTCCCGGAATATGGGAAGATGAAGGGACATTTTCCCACCTGGATTACTAACAAAGACCGCAAGCTGCTTCAAGCTTCTGTGAATCAGACTAAGTTCAATCTTGTTGTGGCCCAAGATGGCACTGGAAACTTCAAAACTATAGCGGACGCGCTGGCTGCTGCTCCCAACTCCAGCACAACCAGGTTTGTGATACACATAAAAGCTGGAGCGTATTTTGAGAACGTGGAGGTGATTAAGAAGAAGACGAATTTGATGCTGGTGGGTGACGGAATCGGAAAAACCGTCGTGAAGGCCAGTAGGAATGTCGTCGATGGCTGGACCACTTTCCAGTCCGCTACTTTTGCTGTAGTAGGAGACGGATTCATAGCAAAAGGCATAACCTTTGAGAACTCGGCGGGACCCAGCAAGCACCAGGCCGTGGCCGTAAGAAACGGTGCAGATCTCTCAGTATTCTACCAGTGCAGTTTCGTGGCATACCAAGACACCCTGTACGTCCATTCCCTACGCCAATTCTACCGTGACTGCGACGTATACGGCACCGTAGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAAAACTGCAACCTATATGCACGCAAGCCCGATCCAAACCAAAAGAACCTCTTCACCGCACAGGGCAGAGAAGACCCCAACCAGAACACGGGAATATCAATCTTGAACTGCAAGGTTACAGCCGCATCGGATCTAATCCCGGTGAAGTCGTCGTTCAAGACTTACCTTGGCAGGCCATGGAAGCTGTATTCAAGAACGGTTTATATGAAATCGTTCATTGACGATTTGGTTGACCCTGCGGGGTGGTTGGAGTGGAATGGAACCTTTGCGTTGGACACGTTGTATTATGGTGAGTACCAAAATAGGGGTCCTGGTTCGAACACAAGCGCTAGGGTTAAGTGGCCTGGTTATAGAGTCATTACTAACTCAACTGAGGCAAGTCAATTCACGGTTAAGCAGTTTATATTGGGCGATGAATGGCTTAACTCCACCGGTGTTCCCTTTTTCACTGGTTTGAGTTGA 1647 0.5003 MYNLTRRRTALLLSLFLVNIIITKATASDEKEAHIQVAESACEGTFYRDLCVSTVSTFPDLASKSLPQTICSLLNHTVGEVTSSSYNCTGLRKGLRNLSTMEKRALDDCIALFDDTRTELATTISDLNQTTIPSRRHHDSQTLLSAAMTNLYTCLDGFAYCKGSHVRERYLQDKLFQISNHVSNSLAMLKKVPGVKKPSKSEVFPEYGKMKGHFPTWITNKDRKLLQASVNQTKFNLVVAQDGTGNFKTIADALAAAPNSSTTRFVIHIKAGAYFENVEVIKKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDGFIAKGITFENSAGPSKHQAVAVRNGADLSVFYQCSFVAYQDTLYVHSLRQFYRDCDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISILNCKVTAASDLIPVKSSFKTYLGRPWKLYSRTVYMKSFIDDLVDPAGWLEWNGTFALDTLYYGEYQNRGPGSNTSARVKWPGYRVITNSTEASQFTVKQFILGDEWLNSTGVPFFTGLS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0473 548 Gene3D - 230 547 IPR012334 -
Amo16g0473 548 SMART PMEI_2 33 188 IPR006501 GO:0004857
Amo16g0473 548 CDD PMEI-like_3 40 194 - -
Amo16g0473 548 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Amo16g0473 548 PANTHER PECTINESTERASE 26 545 - -
Amo16g0473 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 192 IPR035513 -
Amo16g0473 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 194 IPR035513 -
Amo16g0473 548 PANTHER PECTINESTERASE 26 545 - -
Amo16g0473 548 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 191 IPR006501 GO:0004857
Amo16g0473 548 Pfam Plant invertase/pectin methylesterase inhibitor 39 188 IPR006501 GO:0004857
Amo16g0473 548 SUPERFAMILY Pectin lyase-like 233 546 IPR011050 -
Amo16g0473 548 Pfam Pectinesterase 236 533 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0473 Amo-Chr16 8012950 8017720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0473 62 543 Carbohydrate Esterase AT4G02320 56.275 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0473 K01051 - gmx:100802881 828.935