Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0455 ATGGCAGCTTCAGATCTATCTATAAGCTTATTATTATTCACTGCCACTATTATTTTCTCCAACTTGGCTTCTCTTGCATCTTCATCTTCCTCCATTTGCGACCTCACACCATATCCACCCTTCTGCAAATCCAATTCACCTTCCAAAGGCCGCAGTGACATACATAGCTATGGTCGATTTTTCGCACGCAAATCCCTCTTATCATCTACTAAGTTTCGCTCATTAGTCTCTAAGTATCTCAAACCTCGTTCCAAAAACAAATTATCTAGGTCCATGCTTCTTGCCCTTCAAGATTGCTACCTTCTAAGTGACTTCAACGTAGATTTCTGGACCAACACTCTCAACGCCATAAATTCCACTAACACACTCAGTAGCTCAGAGGATGAAAATTATTTGCATAGCATGATTAGTGCTACTTTAACCAACCACGACACATGCTTAGATAGCCTCCAACAAGCCACAACCACACACACTGATGAATTACTCATCAGCAATATCTCCAATGGGACCAAGTTTTATAGCATATCCCTTGCATTTTTCAAGCAAGGTTGGGGAACCAAAAAAAACACACACAACAGAAAATTAACAGAGAGGATAGTAAAGAGAAGTAACATTCATCGCATGTGGGAACAGAGGCTGTATGAGATAACAAAAAGAAGAGGAAGAAAACTGCTTCAGTTAGATCCTGAGGCGAATGTTGTTGTGAGCCAAATGGTGGTGGTGAACCCAGATGGCTCTGGAGACTACACAACTATTAATGATGCAGTGAATGCAGCACCAAACAACACCCTTGGTATCAATGGCTTTTTTGTAATTTATGTGGTTGCAGGGGTGTATGAAGAATACGTTTCCATTCCAAAAACCAAGCAGTATTTGATGATGATAGGTGATGGTATTAACCGGACTATAATCACCGGAAATCGAAGCGTCACTGATGGCTGGACAACCTTCAACTCTGCCACGTTTGCTGTGGTTGCAAAAGGCTTTGTCGCGGTGAACATGACATTTCGGAACACAGCCGGAGGAATAAACCACCAAGCAGTGGCGCTTCGGAGCGGCGCAGATCTGTCTGCATTTTATAGCTGTAGCTTTGAAGGATACCAAGACACATTGTACACGCATTCTATGAGGCAATTCTACAGAAACTGCGACATTTATGGCACTGTGGACTTCATATTTGGCAATGCAGCGGTTGTCTTCCAAGATTGTAACATCTACCCAAGACTACCAATGAGTAATCAATTCAATGCAATCACTGCACAGGGCAGAACTGACGTGAATCAAAACACTGGAATCTCCATACACAATTGCACCATAACGGCCGCAGCCGATTTAGCTGCTAGTAACGGCACCACAAAAACGTACCTAGGGAGGCCATGGAAACTGTATTCAAGAACAGTTTACATGCAATCTTTCATGGATAGCTTGATCGATCCAGCGGGTTGGGTTGCTTGGTCTGGGGACTTTGCCTTAGACACCCTTTATTATGCTGAATATGATAACTGGGGAGCCGGATCAAATACCAGTAGRAGGGTTACTTGGGCAGGTTACGATGTGCTTTTGGACAGCATAGGGGGAGACCCAGAGAGGAATAAAAGATTAGTCCTTATAGGAGTCTCAACCTTCTTATTGGTGGCCATGGTGGTGGCCGTCACACTCAGCGTCACCTTGAACAAGAACTCCAGCGATGGTTCAAAGGCAGAAGACCAGAGCCATGTTGCATCGTCGGTGAAAGCGGTGAAGACCCTCTGCGCCCCTACAGATTACAGAGAGGAATGCGAGCAGTCATTGTCCGCAGAAGCCGGCAACACCACGGATCCAAGGGAACTCATCAAGATCGCATTCAACATCACCATCAAGAGGATCACCGATGGCCTTGAGCAGACCCAGATGCTTCAGGAATTGGAGAACGACCCCATGGCCAAGCAGGCTCTCGACTCTTGCAAGCAACTCATGGACCTCTCCATTGACGAGTTCAACAGGTCCCTCGASAAGCTTGGAAGGTTCGACCTCAACAACATCGACAACATTCTCAGCAGCTTGAAGGTCTGGCTCAGCGGTGCCATCACCTACCAGGAGACCTGCCTTGACGGCTTCGAGAACACCACCAGCAGCGCCGGCGAGCAGATGAAGGAATTGTTGAGGACCGCCATGCACATGAGCAGCAATGGCCTCGCCATCATCACCGAGCTCGACAAGACCATGAGCGCCATGCATTTCCCCTCCACCCAGCCCGCCGGAGCCCGCCGCCTGATGTCCGAGGACGARGAGGACCAGGACCAGGARCAGGAGCTCCCCGAGTGGATCGAGGACCGCATCGCCGTCCGCAAGCTTATGGCTACTGTTGGTGGCGGAAGAAGGWTCAAGGCTSACGTGACAGTTGCAAAGGATGGTTCTGGTGATTTCCAGACCATCYCAGAAGCCTTGAGGAAGGTTCCTTCAAATAACAAGAAGCCCTTCATCATCCACATCAAGGAGGGTGTCTACCAGGAGTACCTTGAAGTCCCCAGGAACTTGACCCACGTTGTCTTCATCGGCGATGGTGGTCACAAGACCCGCATCACCGGCYATAAGAACTTCATCGATGGCGTTAACACTTACAAGACCGCCACCGTTGCTGTTCAAGGAGACTACTTCGTTGCCATGGGAGTAGGATTCGAGAACTCAGCCGGAGCAGCGAAGCACCAGGCAGTGGCTCTGAGGGTGCAAGCAGACAAATCCATCTTCTACAAGTGCAGAATGGACGGWTACCAAGACACACTGTACGCCCACACCATGCGTCAGTTCTACAGAGACTGCGTGATCTCAGGCACCATCGATTTCGTGTTCGGAGATGCAGTGTCAGTCTTCCAGAACTGCACCTTCGAGGTGAGGAAGCCATTGGCAAACCAYCAGTGCATTGTGACAGCACAAGGCAGGAAGGAGAGGTACCAGCCAACAGGAATTGTGATCCAGGGTGGTTCCATCGTGTCKGACCCAGAATACTTCCCAGTTAGGTTCACCAACAAGGCCTTCCTTGCTCGTCCATGGAAGAATTACTCAAGGACCGTCTTCTTGGATACCTACCTTGATGACTTGGTCACCCCCGCCGGTTACATGCCATGGCAAACAGCCGAGGGACTCTCCGGCATGGACACTTGCTACTACGCTGAGTTCGGCAACCGTGGTCCCGGAGCTGACAACACCAACCGTGTCAACTGGCTTGGTATCAAGAAAAACTTCACAGCACAAGCAGCAAACATGTACAACCCAACCAACTTCTTCCGTGGAGATGAATGGATCAAGGTCATCGATCTTATTTGTGTGTTCAATACAAGGAGAGTGCTTCTTGCAGGATACTTATTAGATCAGATACACAATTACGCAAGTTAA 3372 0.4831 MAASDLSISLLLFTATIIFSNLASLASSSSSICDLTPYPPFCKSNSPSKGRSDIHSYGRFFARKSLLSSTKFRSLVSKYLKPRSKNKLSRSMLLALQDCYLLSDFNVDFWTNTLNAINSTNTLSSSEDENYLHSMISATLTNHDTCLDSLQQATTTHTDELLISNISNGTKFYSISLAFFKQGWGTKKNTHNRKLTERIVKRSNIHRMWEQRLYEITKRRGRKLLQLDPEANVVVSQMVVVNPDGSGDYTTINDAVNAAPNNTLGINGFFVIYVVAGVYEEYVSIPKTKQYLMMIGDGINRTIITGNRSVTDGWTTFNSATFAVVAKGFVAVNMTFRNTAGGINHQAVALRSGADLSAFYSCSFEGYQDTLYTHSMRQFYRNCDIYGTVDFIFGNAAVVFQDCNIYPRLPMSNQFNAITAQGRTDVNQNTGISIHNCTITAAADLAASNGTTKTYLGRPWKLYSRTVYMQSFMDSLIDPAGWVAWSGDFALDTLYYAEYDNWGAGSNTSRRVTWAGYDVLLDSIGGDPERNKRLVLIGVSTFLLVAMVVAVTLSVTLNKNSSDGSKAEDQSHVASSVKAVKTLCAPTDYREECEQSLSAEAGNTTDPRELIKIAFNITIKRITDGLEQTQMLQELENDPMAKQALDSCKQLMDLSIDEFNRSLXKLGRFDLNNIDNILSSLKVWLSGAITYQETCLDGFENTTSSAGEQMKELLRTAMHMSSNGLAIITELDKTMSAMHFPSTQPAGARRLMSEDEEDQDQEQELPEWIEDRIAVRKLMATVGGGRRXKAXVTVAKDGSGDFQTIXEALRKVPSNNKKPFIIHIKEGVYQEYLEVPRNLTHVVFIGDGGHKTRITGXKNFIDGVNTYKTATVAVQGDYFVAMGVGFENSAGAAKHQAVALRVQADKSIFYKCRMDGYQDTLYAHTMRQFYRDCVISGTIDFVFGDAVSVFQNCTFEVRKPLANHQCIVTAQGRKERYQPTGIVIQGGSIVSDPEYFPVRFTNKAFLARPWKNYSRTVFLDTYLDDLVTPAGYMPWQTAEGLSGMDTCYYAEFGNRGPGADNTNRVNWLGIKKNFTAQAANMYNPTNFFRGDEWIKVIDLICVFNTRRVLLAGYLLDQIHNYAS* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0455 1123 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Amo16g0455 1123 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 182 IPR035513 -
Amo16g0455 1123 Gene3D Invertase/pectin methylesterase inhibitor family protein 574 733 IPR035513 -
Amo16g0455 1123 ProSitePatterns Pectinesterase signature 2. 935 944 IPR033131 -
Amo16g0455 1123 PANTHER PECTINESTERASE 536 1096 - -
Amo16g0455 1123 CDD PMEI-like_3 32 185 - -
Amo16g0455 1123 PANTHER PECTINESTERASE 92 518 - -
Amo16g0455 1123 PANTHER PECTINESTERASE 92 518 - -
Amo16g0455 1123 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 579 731 IPR035513 -
Amo16g0455 1123 SMART PMEI_2 24 179 IPR006501 GO:0004857
Amo16g0455 1123 SMART PMEI_2 575 727 IPR006501 GO:0004857
Amo16g0455 1123 PANTHER PECTINESTERASE 536 1096 - -
Amo16g0455 1123 SUPERFAMILY Pectin lyase-like 234 523 IPR011050 -
Amo16g0455 1123 SUPERFAMILY Pectin lyase-like 789 1097 IPR011050 -
Amo16g0455 1123 CDD PMEI-like_3 582 733 - -
Amo16g0455 1123 ProSitePatterns Pectinesterase signature 1. 816 835 IPR018040 -
Amo16g0455 1123 Pfam Pectinesterase 792 1091 IPR000070 GO:0030599|GO:0042545
Amo16g0455 1123 Pfam Pectinesterase 239 522 IPR000070 GO:0030599|GO:0042545
Amo16g0455 1123 Pfam Plant invertase/pectin methylesterase inhibitor 30 178 IPR006501 GO:0004857
Amo16g0455 1123 Pfam Plant invertase/pectin methylesterase inhibitor 579 727 IPR006501 GO:0004857
Amo16g0455 1123 Gene3D - 786 1100 IPR012334 -
Amo16g0455 1123 Gene3D - 232 528 IPR012334 -
Amo16g0455 1123 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 182 IPR035513 -
Amo16g0455 1123 TIGRFAM PME_inhib: pectinesterase inhibitor domain 547 731 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0455 Amo-Chr16 7316936 7321786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0455 94 520 Carbohydrate Esterase AT3G05610 40.278 7.41e-100 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0455 K01051 - gmx:100801686 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0455 16 7316936 7321786 Amo19g1284 19 25735046 25737193 ECH
Amo16g0455 16 7316936 7321786 Amo16g0455 16 7316936 7321786 ECH