Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0454 ATGGCAATAACTTCAAAGATAATGTCCCTAACATTATGCATGTTTTTATGGCAATTTGCATCTCTTGCATTATTATCAGCATCATCAACTTCTTCCTCCATAGACACAATTTGCAACCTCACACCTTATCCAACATTTTGCAAATCCAATTCCCCTTCTAATGTCCAAGGAGGTGACATTCATGAGTATGGCCGCTTTTACACAAACAAGTCCCTGTCATCATCAAGGGATGTTCTCTCATTACTCTCTAGCTACTTACAATCTCCCTCCAAATTCTCCCAGTCAACGATTCTCGCCCTTGAAGATTGCCACCTCTTAGTTGACCTCAACATAGATTTCTGGACCAAGACTCTACAAACTGTAGACACCACAAACCGCACCCTTAATAGTTCCGAGGCTGAAAACCTTCTTACCATGATTAGTGCTACATTAACCAATCTCGATACCTGCTTAGAAAGCCTTAAAGAAGCCACGTCATCAACCCCTGATGACAACCTAGTAAGCCATGTTTCAAACGGAACCATGTTTTCCAGCATATCTCTTGCACTCTTTAAACGGGGTTGGGCTTCAAGCATAACCACACAACAGAGTCGAAAGCTGTTTTCTGATGCTTACGCGTGGGAACAGAGGGTTCACGAGATAATCAGAAAGAGAGGGAGAAAGCTGCTTCAGAGTGCTCCTGACGGTGTTGTTGTGAACCAAACGGTGGTGGTGAATCCTGATGGCTCTGGAAACTTCACAACTATCAACGATGCTGTGGCTGCGGCACCCAACAACACCGGTGGTGTCAATGGTTTCTTTGTGATTTATGTGGTTGCAGGAGTGTACGAAGAGTATGTATCTATTCCAAAATACAAGCAGTACTTGATGATGATRGGTGATGGTATCAACCAGACCATAATCACCGGCAATCACAGCGCCGGTACTGGCTACACTACCTTCAATTCTTATTCATTTGCTGTGGTTGCGCAAGGATTCGTGGCTATGAATATAACATTTCGCAACACAGCAGGAGCAAGCAATCACCAAGCGGTGGCTCTCAGAAGCGGAGCAGATCTATCCGCATTCTACAATTGCAGCTTCGAAGGGTACCAAGACACTTTATACACACATTCAATGAGACAATTCTACCGAGATTGCGACATTTACGGCACAGTTGACTTCATATTTGGCAACGCAGCAGTTGTGTTGCAAAACTGTAACATTTTGCCACGCCTACCAATGAGTGGCCAGTACAACACCATCACAGCACAGGGCAGAACTGACATTAACCAAAACACAGGAACATCTGTACACAACTGTACAATAACCGCCGCCACCGACTTGGGCACCACTAAAACGTATCTTGGGAGGCCATGGAAGGAGTATTCAAGAACGGTTTACATGCAGTCTTTCATGGACAGTTTGATTGATCCTGCTGGTTGGGCAGAGTGGTCAGGGACATTGTATTTGGACACTCTTTATTATGCGGAATATGATAATTGGGGTCCTGGATCTAACACTAGTAATAGGGTCACTTGGGCAGGCTACCATGTCATTAATGCCACTGATGCACAGAATTTCACAGTTTCTAATTTCATATCCGGTGCTGCATGGTTACCTCCTACTGGAGTCCCCTACTTTCTTGATTTAATTTGA 1638 0.4426 MAITSKIMSLTLCMFLWQFASLALLSASSTSSSIDTICNLTPYPTFCKSNSPSNVQGGDIHEYGRFYTNKSLSSSRDVLSLLSSYLQSPSKFSQSTILALEDCHLLVDLNIDFWTKTLQTVDTTNRTLNSSEAENLLTMISATLTNLDTCLESLKEATSSTPDDNLVSHVSNGTMFSSISLALFKRGWASSITTQQSRKLFSDAYAWEQRVHEIIRKRGRKLLQSAPDGVVVNQTVVVNPDGSGNFTTINDAVAAAPNNTGGVNGFFVIYVVAGVYEEYVSIPKYKQYLMMXGDGINQTIITGNHSAGTGYTTFNSYSFAVVAQGFVAMNITFRNTAGASNHQAVALRSGADLSAFYNCSFEGYQDTLYTHSMRQFYRDCDIYGTVDFIFGNAAVVLQNCNILPRLPMSGQYNTITAQGRTDINQNTGTSVHNCTITAATDLGTTKTYLGRPWKEYSRTVYMQSFMDSLIDPAGWAEWSGTLYLDTLYYAEYDNWGPGSNTSNRVTWAGYHVINATDAQNFTVSNFISGAAWLPPTGVPYFLDLI* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0454 545 Pfam Plant invertase/pectin methylesterase inhibitor 33 183 IPR006501 GO:0004857
Amo16g0454 545 CDD PMEI-like_3 36 189 - -
Amo16g0454 545 PANTHER PECTINESTERASE 14 541 - -
Amo16g0454 545 SMART PMEI_2 29 183 IPR006501 GO:0004857
Amo16g0454 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 185 IPR006501 GO:0004857
Amo16g0454 545 PANTHER PECTINESTERASE 14 541 - -
Amo16g0454 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 186 IPR035513 -
Amo16g0454 545 ProSitePatterns Pectinesterase signature 2. 382 391 IPR033131 -
Amo16g0454 545 Gene3D - 229 544 IPR012334 -
Amo16g0454 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 186 IPR035513 -
Amo16g0454 545 SUPERFAMILY Pectin lyase-like 231 542 IPR011050 -
Amo16g0454 545 Pfam Pectinesterase 236 529 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0454 Amo-Chr16 7308718 7311725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0454 10 545 Carbohydrate Esterase AT1G02810 50.607 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0454 K01051 - gmx:100801141 775.007