Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo16g0444 | ATGAAAGTGCGCAAGAAGATTTTGAAGAGAAAGGTTTCCGTGACTTCTACCAAACATCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAACCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTGATGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCAGGACAAAAAGGAGGAAAGAATTGGGTAGGCCAAGGAGAATGCTTTTACCCGAGGATTCCAATTCCGATGCATATGGTGCCTCTTCTGGTTCATCTGATTTCGAGTTTACTATCTCCGAAGAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGTTCTTCCCATTTAACCAAAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGTTGGGAAAGCAGGTGTGCGGAATTTGTTTGTCTGAGGAAAATAAAAGAAAAATAAGAGGAATTCTAAATTGTTGTACTCACTACTTTTGCTTTACCTGCATTGTGGAGTGGGCAAAAGTGGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCAACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTCTGACTGATCCAAGTGTCCCAACTCAAAACTTGCCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACATGATATCTTCACCCCGGGCATCTTTTAGTCAAGGATTTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCTCCCATTCTTAGACGAGAGATTATGCAACAATATGTCTCCATCAATGCAGAATGCAGACCCCTCCTCAACGAGAATTGGCAATGCTAGAAGACCAATGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATGCACGGTGTGCTATTGCCCGTACTTGTGGCAACAACACCTTCCGTATCTGGTTATGAACAAGTTTATCCGTTCAACAACAGCATAGACGTGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTAGAAACAATAAAGCAGCAGTTGAAGTCGATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAAATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG | 1965 | 0.429 | MKVRKKILKRKVSVTSTKHRKRKKSRASNKPLKKKRRNRGLKRKVRCDDVDDFIDNGPASRTKRRKELGRPRRMLLPEDSNSDAYGASSGSSDFEFTISEEEREQVREAQELCQSSRRNLRSSSHLTKNEEIELHEDRHQLRKPHGRKGKEKIDESQGRKGKEKVEDLKNELGKQVCGICLSEENKRKIRGILNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERLTDPSVPTQNLPVRPSIVLNERESIDLNMISSPRASFSQGFGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYLPFLDERLCNNMSPSMQNADPSSTRIGNARRPMVQDSAMLANRSMHGVLLPVLVATTPSVSGYEQVYPFNNSIDVVTDNSLPVAIKEESNLETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKNVVKNILDRRMSSQWLRLGL* | 655 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo16g0444 | 654 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 219 | IPR001841 | - | |
Amo16g0444 | 654 | CDD | RING-HC_Topors | 177 | 219 | - | - | |
Amo16g0444 | 654 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 240 | IPR013083 | - | |
Amo16g0444 | 654 | PANTHER | F18C1.6 PROTEIN | 3 | 642 | - | - | |
Amo16g0444 | 654 | SMART | PHD_3 | 269 | 314 | IPR001965 | - | |
Amo16g0444 | 654 | Pfam | PHD-finger | 269 | 315 | IPR019787 | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 147 | 165 | - | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 112 | 165 | - | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 43 | 64 | - | - | |
Amo16g0444 | 654 | SMART | ring_2 | 177 | 218 | IPR001841 | - | |
Amo16g0444 | 654 | Coils | Coil | 99 | 119 | - | - | |
Amo16g0444 | 654 | Pfam | Ring finger domain | 176 | 219 | IPR001841 | - | |
Amo16g0444 | 654 | SUPERFAMILY | RING/U-box | 176 | 225 | - | - | |
Amo16g0444 | 654 | ProSitePatterns | Zinc finger RING-type signature. | 196 | 205 | IPR017907 | - | |
Amo16g0444 | 654 | SUPERFAMILY | FYVE/PHD zinc finger | 240 | 315 | IPR011011 | - | |
Amo16g0444 | 654 | PANTHER | F18C1.6 PROTEIN | 3 | 642 | - | - | |
Amo16g0444 | 654 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 335 | IPR013083 | - | |
Amo16g0444 | 654 | ProSiteProfiles | Zinc finger PHD-type profile. | 267 | 316 | IPR019787 | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 123 | 140 | - | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 412 | 448 | - | - | |
Amo16g0444 | 654 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo16g0444 | Amo-Chr16 | 7115281 | 7118033 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo16g0444 | 264 | 313 | C2H2 Transcription Factor Family | AT3G01460 | 46.154 | 1.03e-08 | 57.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Amo16g0444 | PHD | 8.9e-09 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo16g0444 | - | - | gmx:100791422 | 798.505 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo16g0444 | 16 | 7115281 | 7118033 | Amo16g0444 | 16 | 7115281 | 7118033 | ECH |