Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0444 ATGAAAGTGCGCAAGAAGATTTTGAAGAGAAAGGTTTCCGTGACTTCTACCAAACATCGAAAGAGGAAGAAATCTAGAGCTTCAAATAAACCCTTGAAAAAGAAAAGAAGGAATAGAGGGTTAAAGAGGAAAGTAAGATGTGATGATGTGGATGATTTTATTGATAATGGCCCAGCCAGCAGGACAAAAAGGAGGAAAGAATTGGGTAGGCCAAGGAGAATGCTTTTACCCGAGGATTCCAATTCCGATGCATATGGTGCCTCTTCTGGTTCATCTGATTTCGAGTTTACTATCTCCGAAGAAGAAAGAGAACAGGTCCGAGAAGCCCAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGTTCTTCCCATTTAACCAAAAATGAAGAGATTGAGTTACATGAAGATCGACACCAACTAAGGAAGCCTCATGGTCGAAAGGGTAAGGAAAAGATAGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGTTGGGAAAGCAGGTGTGCGGAATTTGTTTGTCTGAGGAAAATAAAAGAAAAATAAGAGGAATTCTAAATTGTTGTACTCACTACTTTTGCTTTACCTGCATTGTGGAGTGGGCAAAAGTGGAAACTCGGTGTCCTTTGTGTAAGCAGAGATTCAGAACAATTACTAAGCCTGCCAGATCAACTGCAGGAGTTGATTTTAGAGAAGTGGTAGTAGAAGTGCCTGAACGCGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGCCCTCATGTTACTATGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCGGATGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTCTGACTGATCCAAGTGTCCCAACTCAAAACTTGCCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACATGATATCTTCACCCCGGGCATCTTTTAGTCAAGGATTTGGGCATATTTCATCTGCTAGAGTTTCTGGTAGAAGTGTTGAACTAGCTTCTCCAGGACCTGGAGGAGGGGCACCGACTTTATCAGAAAGGCGCTGGATACTCCGACAGATTCACCAGCTACGTTCGGTATCTGGCAGAACCAATGGTACTTCAGCTACCAATTCAACAAGTAACTTGTATAACTCTCAAACCGATCAAGGCAGGGAAACAAATGCAACACAGCATACAAGGGCACAGGATGCGGGAACATCGTACCTCCCATTCTTAGACGAGAGATTATGCAACAATATGTCTCCATCAATGCAGAATGCAGACCCCTCCTCAACGAGAATTGGCAATGCTAGAAGACCAATGGTTCAGGATTCAGCTATGCTTGCCAACAGATCTATGCACGGTGTGCTATTGCCCGTACTTGTGGCAACAACACCTTCCGTATCTGGTTATGAACAAGTTTATCCGTTCAACAACAGCATAGACGTGGTCACTGACAATAGCTTACCCGTTGCTATCAAAGAAGAGAGTAACTTAGAAACAATAAAGCAGCAGTTGAAGTCGATGGTTAAAAGACACCTGTGGAGCTTATCTCGAGATGTTGATTTAGGGCATAATACTCTCAAGGACGTTGCAAGGAGTTCTAAACACACCGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGGTCTGTGCCCGCACCAGATGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAAATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 1965 0.429 MKVRKKILKRKVSVTSTKHRKRKKSRASNKPLKKKRRNRGLKRKVRCDDVDDFIDNGPASRTKRRKELGRPRRMLLPEDSNSDAYGASSGSSDFEFTISEEEREQVREAQELCQSSRRNLRSSSHLTKNEEIELHEDRHQLRKPHGRKGKEKIDESQGRKGKEKVEDLKNELGKQVCGICLSEENKRKIRGILNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFREVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHQGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPDALASSSSQVQERLTDPSVPTQNLPVRPSIVLNERESIDLNMISSPRASFSQGFGHISSARVSGRSVELASPGPGGGAPTLSERRWILRQIHQLRSVSGRTNGTSATNSTSNLYNSQTDQGRETNATQHTRAQDAGTSYLPFLDERLCNNMSPSMQNADPSSTRIGNARRPMVQDSAMLANRSMHGVLLPVLVATTPSVSGYEQVYPFNNSIDVVTDNSLPVAIKEESNLETIKQQLKSMVKRHLWSLSRDVDLGHNTLKDVARSSKHTVLAACGLEHKKSEVRSVPAPDVCPHIELMAGGQTSLIRGCCSTCFDSFVKNVVKNILDRRMSSQWLRLGL* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0444 654 ProSiteProfiles Zinc finger RING-type profile. 177 219 IPR001841 -
Amo16g0444 654 CDD RING-HC_Topors 177 219 - -
Amo16g0444 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 240 IPR013083 -
Amo16g0444 654 PANTHER F18C1.6 PROTEIN 3 642 - -
Amo16g0444 654 SMART PHD_3 269 314 IPR001965 -
Amo16g0444 654 Pfam PHD-finger 269 315 IPR019787 -
Amo16g0444 654 MobiDBLite consensus disorder prediction 1 42 - -
Amo16g0444 654 MobiDBLite consensus disorder prediction 147 165 - -
Amo16g0444 654 MobiDBLite consensus disorder prediction 112 165 - -
Amo16g0444 654 MobiDBLite consensus disorder prediction 43 64 - -
Amo16g0444 654 SMART ring_2 177 218 IPR001841 -
Amo16g0444 654 Coils Coil 99 119 - -
Amo16g0444 654 Pfam Ring finger domain 176 219 IPR001841 -
Amo16g0444 654 SUPERFAMILY RING/U-box 176 225 - -
Amo16g0444 654 ProSitePatterns Zinc finger RING-type signature. 196 205 IPR017907 -
Amo16g0444 654 SUPERFAMILY FYVE/PHD zinc finger 240 315 IPR011011 -
Amo16g0444 654 PANTHER F18C1.6 PROTEIN 3 642 - -
Amo16g0444 654 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 335 IPR013083 -
Amo16g0444 654 ProSiteProfiles Zinc finger PHD-type profile. 267 316 IPR019787 -
Amo16g0444 654 MobiDBLite consensus disorder prediction 123 140 - -
Amo16g0444 654 MobiDBLite consensus disorder prediction 412 448 - -
Amo16g0444 654 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0444 Amo-Chr16 7115281 7118033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0444 264 313 C2H2 Transcription Factor Family AT3G01460 46.154 1.03e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo16g0444 PHD 8.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0444 - - gmx:100791422 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0444 16 7115281 7118033 Amo16g0444 16 7115281 7118033 ECH