Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0441 GTCATTGTATTGGGGAGCCCTAGGGTTTTAGGGGTATATTCACAATCACATAGTCGGTTGTGCTTCTGTTTCTATTCTCATTACTACTCTCTGCTGCAGCAGCGTGCGGGTGTTAGTAGGAGTACTAGTACTCATTTACATTTCCATTTTATTTTTCTCTCTTTCGCCGATTCGGTTATGGTAATGATGGATCTCAACAAGGAATGGGTGTGTGAGGAATTGAGTGAGAGCAAGAAGTGTTGTAGTGATTGCAAGACCACCAAGACTCCACTGTGGAGAGGAGGACCTGCTGGTCCCAAGAGTCTTTGCAACGCGTGCGGAATAAGGTACCGGAAGAGAAGGGCTTCAGCGGTGGGAATGAGAAAAGGACAAGAGAGGAAGAGAGAGAGATCACAAAATGGCGGTGGCAGCAGCTCCTCTACCTCCTCCTCTGATAACGAGTTGAAGGAGTCGTTGAAAGTGAATTTGATGGCGTTGGGTGAGGAGTTTTGGTTGCTAAAGAAGAAACAGAGGAGTATGTGTTTGTTGGGGGAAGAGGAACAAGCCGCTGTGTGTTTAATGGCACTCTCTTGTGGCTATGTTTTTGCTTAA 591 0.4636 VIVLGSPRVLGVYSQSHSRLCFCFYSHYYSLLQQRAGVSRSTSTHLHFHFIFLSFADSVMVMMDLNKEWVCEELSESKKCCSDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRASAVGMRKGQERKRERSQNGGGSSSSTSSSDNELKESLKVNLMALGEEFWLLKKKQRSMCLLGEEEQAAVCLMALSCGYVFA* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0441 196 MobiDBLite consensus disorder prediction 133 147 - -
Amo16g0441 196 PANTHER GATA TRANSCRIPTION FACTOR 16 67 196 - -
Amo16g0441 196 MobiDBLite consensus disorder prediction 116 147 - -
Amo16g0441 196 CDD ZnF_GATA 81 132 IPR000679 GO:0006355|GO:0043565
Amo16g0441 196 Pfam GATA zinc finger 81 114 IPR000679 GO:0006355|GO:0043565
Amo16g0441 196 ProSitePatterns GATA-type zinc finger domain. 81 106 IPR000679 GO:0006355|GO:0043565
Amo16g0441 196 ProSiteProfiles GATA-type zinc finger domain profile. 75 111 IPR000679 GO:0006355|GO:0043565
Amo16g0441 196 MobiDBLite consensus disorder prediction 118 132 - -
Amo16g0441 196 PANTHER OS01G0976800 PROTEIN 67 196 - -
Amo16g0441 196 Gene3D - 76 137 IPR013088 GO:0006355|GO:0008270
Amo16g0441 196 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 78 114 - -
Amo16g0441 196 SMART GATA_3 75 125 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0441 Amo-Chr16 7088505 7089597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0441 47 196 C2C2-Gata Transcription Factor Family AT5G49300 45.395 1.06e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo16g0441 GATA 2.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0441 - - lang:109330084 149.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0441 16 7088505 7089597 Amo16g0441 16 7088505 7089597 ECH