LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0432	ATGAACACACTAAGCCAAGCTGGAGACTTAAAGCGGAGACGTGAGGAGGGAGGCATCTGTATCAGGACTGGAAAATATGTGAAGCTCAACATAGAAACGGAAATCGTGCCGGCTCTCACAAAATTCATTCGGAAAGTGGTAAAGGAGGAGTTGGAGAGCAAACTGTCCGTGGCGGAGCTCAAAGCATCACTACATTCAGGCGTAACGACGACATCTGCTAGGGCGGCGGAGAAACGCTACAAGTTGGTTTTCAAGGGTGATTTGGGTGATACAATTTATAAAGACTCCAAAATCAAAGCGAAAGAAAATGATGTTGAGGTTTCTCTATATGATACTGTGAGTAATTCAGTAGTAACACATGGCCCACTGTCTTCCATTAAGGTCGAGATTTGTGCCCTCAACGGCGATTTCGGCTCCAATGGAAGGTGGAGCACAAGCGAATTCAAGCACAACATCGTTCACCAAAGAGAAGATAAAGCCATGTTACTAAAAGGAAAAACGGTTATCACACTAAAGGAAGGAGTTGGTCACATCAACATGAGCTTCACCGGTAACTCAAAGCGTACAAGAAGCAGCCGTTACAGATTAGGAGCCATTGTTCACTTACCTTGTCATCAACAACACGTCGGAGAAGCTGTAAGCAATCCTTTCAGGGTCAAGGAAAGCAGAGGGAATAAGAAGCATTACCCTCCCTCACCTAAGGACGAAATATGGCGATTGGTCAACATATCAAAAGATGGTCACGTCCATGACCGCCTCTTTCGTCACCTTAAAATCCAAACTGTTGAGGATCTCTTGCGTTTTGACAACCCCACCGATCTTCCTTTGTTACAAAAGACATTTGGCCAAAGTCCAAGAAAGCTGAGGGAAACACTTAAGCATGCTAAGACTAGTTGTTATCCTCCGCCGGCAGTGACATGTCAAGGACAAAAGTGTCATCCGCAGAATATTATCATCAACTCCGATGATGATAAGCAGCATGTTGAGGAGACACTAGCATTTGCACATACCTTTCCAGGCCCAATGGCAAGTCTACAACATCAAGATCAACTAGGAACGGGGCAAGATTTTGTCCAACCTTCTACCTCAACACCACACGTTGCTGGAGCAGATAACAATGGCCAGTTTGATTTTGAAAAAGAACTGTTTGAGCTACTATATATCCCCTGA	1170	0.4462	MNTLSQAGDLKRRREEGGICIRTGKYVKLNIETEIVPALTKFIRKVVKEELESKLSVAELKASLHSGVTTTSARAAEKRYKLVFKGDLGDTIYKDSKIKAKENDVEVSLYDTVSNSVVTHGPLSSIKVEICALNGDFGSNGRWSTSEFKHNIVHQREDKAMLLKGKTVITLKEGVGHINMSFTGNSKRTRSSRYRLGAIVHLPCHQQHVGEAVSNPFRVKESRGNKKHYPPSPKDEIWRLVNISKDGHVHDRLFRHLKIQTVEDLLRFDNPTDLPLLQKTFGQSPRKLRETLKHAKTSCYPPPAVTCQGQKCHPQNIIINSDDDKQHVEETLAFAHTFPGPMASLQHQDQLGTGQDFVQPSTSTPHVAGADNNGQFDFEKELFELLYIP*	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0432	389	Pfam	Calmodulin binding protein central domain	233	298	IPR046830	-
	Amo16g0432	389	Pfam	Calmodulin binding protein-like N-terminal domain	80	221	IPR046831	-
	Amo16g0432	389	PANTHER	OS02G0177800 PROTEIN	34	298	IPR012416	GO:0005516
	Amo16g0432	389	PANTHER	CALMODULIN-BINDING PROTEIN	34	298	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0432	Amo-Chr16	6918174	6921522	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g0432	37	305	Calmodulin-binding Proteins	AT5G62570	34.909	4.44e-37	136

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0432	-		-	aip:107645946	790.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo16g0432	16	6918174	6921522	Amo06g0003	06	86677	91415	hybridization