Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0409 ATGTCATCTCTGCAACCGAACGTCGATTCTACAAATTCGGAAACGATGCAACGATCCAATCCCAAGAAGCGCCGGAAAATTGGACACAGCAATTCCCTCAGCCTCGTTCCATGGAAATCCGAGACGCAACAGCGGATCTACTCTTCCAAGCTCGCAGAAGCTCTCCGCTACGTCATCCATCGGAACCCTCCGTCTCTGCCGGCAAAGTCTAGTGCCGGTCGAGAGGTTCGCGAGACCGCCGACCGAGTCCTCGCTTCCACTGCAAAAGGCCGGACTCGTTGGAGCCGCGCTATCCTTGCTAGTCCACTCAACCGGTGGAAGCTCCGGCGGATGCACAAGAAGGTTCACAAGGCCTCCACCGGATTGCCGAAGAAGTCGCCGGAGACTCGCCGGAGATTACCGGTGGTGCAGAAGAAAGCGCGCGTTCTCGGCCGGTTAGTCCCCGGCTGCCGGAAGCTCACGTTCCCGAACCTTCTAGAAGAAGCCACAGACTACATCTCGGCGTTGGAGATGCAGGTGAGAGCCATGACGGCACTCACGGAGTTACTCACCGGCGGCGGCTCCCTCGCCTCGGCTTGA 579 0.5872 MSSLQPNVDSTNSETMQRSNPKKRRKIGHSNSLSLVPWKSETQQRIYSSKLAEALRYVIHRNPPSLPAKSSAGREVRETADRVLASTAKGRTRWSRAILASPLNRWKLRRMHKKVHKASTGLPKKSPETRRRLPVVQKKARVLGRLVPGCRKLTFPNLLEEATDYISALEMQVRAMTALTELLTGGGSLASA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0409 192 CDD bHLH_AtIBH1_like 130 180 IPR044549 GO:0006355
Amo16g0409 192 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g0409 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 15 185 IPR044660 GO:0006355
Amo16g0409 192 PANTHER TRANSCRIPTION FACTOR BHLH149 15 185 - -
Amo16g0409 192 MobiDBLite consensus disorder prediction 1 17 - -
Amo16g0409 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Amo16g0409 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 184 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0409 Amo-Chr16 6602581 6603473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0409 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 46.907 3.43e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0409 - - aprc:113873135 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0409 16 6602581 6603473 Amo16g0409 16 6602581 6603473 ECH
Amo16g0409 16 6602581 6603473 Amo19g1464 19 32400330 32401412 PCT
Amo19g1464 19 32400330 32401412 Amo16g0409 16 6602581 6603473 PCT