Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0408 ATGGCAATGGAAAATTTTCGTAACTCACTAACGAGGAAGAAGTCCTACAAGATCGGCGTCGACGCCGACGAGGCTCGTCGCCGGAGGGAGGACAACCTGGTCGAGATCAGGAAGAACAAGCGCGAGGACAGTCTTCTAAAGAAACGAAGGGAGGGCCTTCTCCTTCACCCTCATTTGCCCAGTAACAACAATAACCATGCCCCTTCTCCTTCCTTCCCCGCCAACCGGGTATGTATATATGATTCACAATCAATTTCAATCTTACAACGCAGCCCTCCAATTGATGAGGTCATTAAGGCAGGTGTTGTCCCTAGGTTTGTGGAGTTTTTGGGAAGGCATGATCTACCACAGTTGCAATTTGAGGCTGCATGGGCTCTAACAAATGTTGCATCTGGAACATCTGAGCACACAGGAGTTGTCATTAAACATGGTGCTGTTCCCCTGTTTGTGCAGCTTCTGAGCTCTGGCAGTGATGACGTTAGAGAACAGGCAGTATGGGCCTTGGGTAATGTTGCTGGTGACTCCCCAAACTGTAGGGATCTTGTTCTAAGTCATGGTGCACTCATGCCATTACTGTCTCAATTGAATCAACATTCTAAACCATCTATGTTGAGGAATGCTACATGGACTTTGTCTAATTTCTGCCGTGGAAAGCCTCCAACACCCTTTGAACAGGTAAAGCCTGCCTTGCCTGTTCTTCGGGAGCTCATTTACTTGAATGATGAAGAAGTTCTAACAGATGCGTGCTGGGCTCTATCTTACCTTTCAGATGGCCCAAATGAAAAAATTCAAGCTGTAATTGAAATAGGAGTATGCCCAAGACTTGTGGAGCTCTTGCTACATCCATCACCTACAGTTCTTATACCTGCTCTTCGAACTGTAGGAAATATTGTTACCGGTGACGATGCTCAGACTCAGTTTGTAATTGATAAAGGAGTTCTCCCCTGTCTTCACCAACTTCTTTCGCAAAATAACAAGAAAAACATCAGGAAAGAAGCTTGTTGGACGATATCAAATATCACAGCTGGGAATAGAATTCAAATACAGGCTGTCATTGAGGCCAACGTTATTCCTCCTCTTGTCAATCTTCTTCAGAATGCAGAATTTGAAATCAAGAAGGAAGCTGCATGGGCTATTTCCAATGCAACTTCTGGAGGATCTCATGAGCAGATTCAGTTCCTGGCAAGTCAAGGTTGCATCAAGCCATTGTGTGATCTATTGACATGTCCCGACCCAAGGATTGTGACAGTTTGTCTTGAGGGGCTGGATAACATTTTAAAGGTTGGAGAAGCTGACAAGGAAATGGGACACAACGGCGGGATCAATGTTTTCGCTCAAATGGTTGACGAATGTGAAGGATTGGATAAGATTGAAAATCTGCAGACCCATGACAACAATGAGATTTATGAGAGGGCTGTGAAGATTTTGGAGAGATATTGGGCTGAGGATGAATTGGAAGTTGAGCAGAGTCAGAATGGCGGGGATGGTACTCAGCAAGGTTTTTCTTTTGGGACTAACCAGCCAACCCTCCCGCCAGGTGGTTTTAACTTCGGGTGA 1557 0.4528 MAMENFRNSLTRKKSYKIGVDADEARRRREDNLVEIRKNKREDSLLKKRREGLLLHPHLPSNNNNHAPSPSFPANRVCIYDSQSISILQRSPPIDEVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTGVVIKHGAVPLFVQLLSSGSDDVREQAVWALGNVAGDSPNCRDLVLSHGALMPLLSQLNQHSKPSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRELIYLNDEEVLTDACWALSYLSDGPNEKIQAVIEIGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFVIDKGVLPCLHQLLSQNNKKNIRKEACWTISNITAGNRIQIQAVIEANVIPPLVNLLQNAEFEIKKEAAWAISNATSGGSHEQIQFLASQGCIKPLCDLLTCPDPRIVTVCLEGLDNILKVGEADKEMGHNGGINVFAQMVDECEGLDKIENLQTHDNNEIYERAVKILERYWAEDELEVEQSQNGGDGTQQGFSFGTNQPTLPPGGFNFG* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0408 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 144 IPR000225 GO:0005515
Amo16g0408 518 MobiDBLite consensus disorder prediction 490 518 - -
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 260 298 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 388 425 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 301 342 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 347 383 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 175 216 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 229 256 IPR000225 GO:0005515
Amo16g0408 518 Pfam Armadillo/beta-catenin-like repeat 91 131 IPR000225 GO:0005515
Amo16g0408 518 SUPERFAMILY ARM repeat 12 482 IPR016024 -
Amo16g0408 518 Pfam Atypical Arm repeat 442 486 IPR032413 -
Amo16g0408 518 PANTHER IMPORTIN SUBUNIT ALPHA 6 506 - -
Amo16g0408 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 312 344 IPR000225 GO:0005515
Amo16g0408 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 383 IPR000225 GO:0005515
Amo16g0408 518 PANTHER IMPORTIN ALPHA 6 506 - -
Amo16g0408 518 SMART arm_5 90 131 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 387 427 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 301 342 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 133 173 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 174 216 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 259 299 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 344 384 IPR000225 GO:0005515
Amo16g0408 518 SMART arm_5 218 257 IPR000225 GO:0005515
Amo16g0408 518 Pfam Importin beta binding domain 12 60 IPR002652 GO:0006606|GO:0061608
Amo16g0408 518 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 186 IPR000225 GO:0005515
Amo16g0408 518 PIRSF Importin_alpha 2 71 IPR024931 GO:0005737|GO:0006606|GO:0061608
Amo16g0408 518 PIRSF Importin_alpha 82 517 IPR024931 GO:0005737|GO:0006606|GO:0061608
Amo16g0408 518 MobiDBLite consensus disorder prediction 486 518 - -
Amo16g0408 518 Gene3D - 11 50 IPR036975 GO:0006606
Amo16g0408 518 Gene3D - 77 481 IPR011989 -
Amo16g0408 518 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0408 Amo-Chr16 6587405 6593590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0408 149 406 U-box Gene Family AT1G23030 25.385 5.01e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0408 K15042 - vvi:100263083 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0408 16 6587405 6593590 Amo16g0408 16 6587405 6593590 ECH