Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0393 ATGGATGATTCAACCTCAGATTCGCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGTTTTTGACATGGTGTATTCTGCAGCCTCTCTCTGTTGTTGATGACCAGTTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTACGCAAAGACAAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTTGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCTTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGGTATCAGACCAAGCAAAACTTACCAATCATTTGTTGCGGCTGCCGGGGGTCACCGCGATTTATTACCCGGAACAGCTCGCTTATTCAATTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTCGCAATTCAGAGGAAAGGTGAATTGCATCACTAGATTAACGAATTCTGCTCTAGGCTATTCAGTATACGAAGTTGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTATGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCAAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACAATGGAACAAGAAGGTAAAAAGGCGACACACACATCAAGAGCAGCCACGATGA 915 0.4328 MDDSTSDSQLNQGEVDYEFESNEVPEFLTWCILQPLSVVDDQFVPKVGMTFTTLEDAEKFYRNYAKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAAAGGHRDLLPGTARLFNSSNNTIIASEAGSKQRENQMLQIFIRSYRVQPNPPLKLSFKMSQFRGKVNCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFKSRGILCRHALSVLSFEQVSQVSPRYILEQWNKKVKRRHTHQEQPR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0393 304 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 207 301 IPR031052 GO:0006355
Amo16g0393 304 Pfam SWIM zinc finger 242 273 IPR007527 GO:0008270
Amo16g0393 304 ProSiteProfiles Zinc finger SWIM-type profile. 240 276 IPR007527 GO:0008270
Amo16g0393 304 PANTHER OS03G0843700 PROTEIN 207 301 - -
Amo16g0393 304 SMART 26again6 251 278 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0393 Amo-Chr16 6371529 6374145 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g0393 SWIM 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0393 - - adu:107484182 266.159