Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0391 ATGCAGAATCAACCCGGTTACCATAACATGATGCCGCACATGAATCAAGCAAATGCACTACGGCCCGAACTTGGCCCCAATATGAACCCAAGAAATTATCATGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTGCTGTTCCAGGCCTACAACATCCAATCGCATACGCAGGAGGCATGATTAGTCCAAGGCCTATGAGTAGTTCTCCTGGTTCTATTTCACCTGCAGGTGGTAATGGCAACTCTGGTACATCATCTTCAAGTGCTAGCAAGAGTTCTGGGGGTCAAGTTGAAGGACCACCCGGTGCCAACCTGTTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCCACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTCGATAAAGCAACCGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCCCCAGAAGCTGCTCAATCAGCCATTAGTATGATGAATGGGTGCCAATTAGGAGGTAAGAAATTAAAGGTCCAGCTTAAGAGGGACAACAAGCAGAGTAAGCCTTACTGA 567 0.4462 MQNQPGYHNMMPHMNQANALRPELGPNMNPRNYHVPPASYVGSYPAVPGLQHPIAYAGGMISPRPMSSSPGSISPAGGNGNSGTSSSSASKSSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQSKPY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0391 188 SMART rrm1_1 104 177 IPR000504 GO:0003723
Amo16g0391 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Amo16g0391 188 PANTHER RNA BINDING PROTEIN 2 175 - -
Amo16g0391 188 Gene3D - 76 180 IPR012677 -
Amo16g0391 188 MobiDBLite consensus disorder prediction 65 97 - -
Amo16g0391 188 CDD RRM3_CELF1-6 105 177 - -
Amo16g0391 188 MobiDBLite consensus disorder prediction 65 98 - -
Amo16g0391 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Amo16g0391 188 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 2 175 - -
Amo16g0391 188 SUPERFAMILY RNA-binding domain, RBD 90 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0391 Amo-Chr16 6341448 6342221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0391 96 188 Eukaryotic Initiation Factors Gene Family AT1G22760 34.409 5.09e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0391 K13207 - ahf:112756610 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0391 16 6341448 6342221 Amo16g0391 16 6341448 6342221 ECH