LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0386	ATGGATTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGTTCTTGCAGAACAGAAGATGCAAAGCAGGGATTTCCCAGGTGCTCGTAAATTTGCTCTCAGGGCTCAGCAGTTATTTCCTGATGTGGAGAACATTGCTCAGATGCTTGTTGTTTGTGATGTGCATTGCTCTGCAGAGCAAAAATTGTACGGTAATGAGATGAACTGGTATAAAATTCTTCAGATTGAGGTGACAGCTGATGAGGCCACAATTAAGAAACAGTACAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAAGTATGCTGGTGCAGAAGCAGCATTCAAGCTGATTGGGGAAGCACAACGAATCCTTTTGGATAGAGAAAAACGCTCGGAGCTTGACAGGAAGTGCAGGGTTGTAATGCACGGGCCTTCTATGGCACCTCATCATCAACAGAAGTTTCAGATGAATTATAATTCTGTAACACAAAACACTGTGAGGCCTAATTTTACGACCTTTAATCCTTGGCAGCAGCAACAACAGCCTTCTCAAACATCTCAACAGGGGATCAATGGTGACCGCGCTACCTTTTGGACTGCATGCTCATTTTGTTCGGTTAGATATGAGTATTATAGGGAAGTTTTGAATAGATCTCTTCGCTGCCAACATTGCAATAAGCCCTTTATTGCATATGATGTCGATGTTCAAGGTACAACCCCAGCAACTAATCTAAGTCAGCAAACTTTCACCCAGCGGACATATGGCCTCAATCATGGTGCCGTGAAGGTGGATTTTGGAGCTCAAGCTAATCTGCATACAAAGAAGTCCGATACAGAGTCTAGGGCAAACAAAGGCTCTACTTCTGATGTCTCCAAAAAGCCAAATGGAAAGAGGAGCAGGAAGCAGATGGTTGAATCCAGTGAAAGTTCTGATTCGTTTAGCAGTGATTCTGACGATATGTTTGCTAACGATGATGGTTTTACTGATTTGGAAAAAAATTCGGCTTCTAGAGAAGAGCATCCGCGGAGGTCTACACGGCAAAAGCATCAGGTTTCCTACAATGAGAATGCAAGTGATGACGACGATGATGAATCATTTGAGCCTTCAAGAATCAATACAGGGAATGGATCATCAAACCCTGCTAATGAAATGAATAATCAAAATGGTTTAGCCTCTGGTCTGAAAGATAATAAAAAAGGTGTAAAGCGAGACTCTGAAGAGGACTTGGTAAATAGAAATGCGAAAATTAAAGAAGTGAGGGGTGAAGAAGTAGTGGGAGATTCAAAAGTAGATGAAGCTTCAGAGAATGATGTCTATCCTGATCCAGAGTTTAGTGACTTTGACAAGGACAAGAAAGAGGATTCTTTTGCTGCTGGGCAGATTTGGGCTATTTATGATATGGCAGATGGCATGCCAAGATTTTATGCTTTGATAAAAAAAGTTATGTCTCCTGGGTTCAAGTTGCGGATAACATGGCTTGAACCAGATCCAGATGACGATGATGAAATCAGCTGGTCGAATAAGGAATTGCCAATTGCATGTGGGAAGTATAAACTTGGTAGCAGTGACATCATTGAAGGCCATGAGACGTTCTCGCATGAGATTACTTGTGAAAAGGTTGGCCGGAGCTCTTTCAACGTGTACCCTAGAAAGGGAGAAACTTGGGCTCTTTTTAAAAACTGGGATATTAAATGGCATAAGGATGCAGAATCCCATCGGAAGTTTGATTTTGAGTTTGTGGAAATCTTGTCAAATTATGTTGAAGGTGACGGAGTATTTGTTGCATTATTGGGGAAGTTGAAAGGCTTTGTGAGTCTCTTCTTTCCTATTTTGAAGGACGGTAAGCCATTATTTCAAATACCATCAACACAGTTGTTCAGATTCTCTCACAGGGTTCCGTCTTTTCGGATGACTGGTCAGGAAGGAGTAGGTGTTCCTATGGGATCTTTAGAACTTGATCCTGTATCCTTGCCTATGAATCTGGATGAGATTGAACTTCCTGGAGAATTAATAGGGAAAAATAGTCAAAGTCCATCTGTTGGGATGAGTTCAAGGTCTTCAGATGCCTTAAAATTCTCCATGAAATCTGACACACATGCATCTACTTCTAAGATTAACTTGGAAGGTCAAAATTCAACACTAAGGACCAAGGCTCCTGTTGATCATATTGCTAATGGTAGTGCTCCTTCAGCTTCAGTGGCAGCAGCTATTCAAGTACCCAAACAGCAGTTCTTCAATTTTGATGAGGAGAGATCAAAGGTTGGCGTTGGTCAGGTTTGGGCAAGTTATGGTGGACAGGATGGAGCACCAAGGTATTATGGTTTGATTATATTGATTAAGCCTAGCCCAGATTTTGAGGTGCATGTTTTGAATCTTACTAATTGCTGGATACCAGATACTGCTGTTAAATGGGATGACAAGAAAATGATCGTTCCTTGCGGACGATTTCGGGTTATACAAAGTCCTGTTGTCTCTATTCTTAAGGACACAAATTCTTTTTCACATCAGCTGCATCCTGTTACTGATGGTAATGGCAGGGATAAGGAGTTCATAATATTCCCAAGGAAAGGTCAAGTTTGGGCATTGTATAGGAAATGGACAACTAAAATCAGGCGAGCCGATTTGTTAAAGATGGAGTATGATATAGTGGAAGTTGTTGAAGAAGATAATAATAGTTTGGGGATAGAGGTGTTGCCTTTGGAGAAGGTGAGTGGTTATCATTCAGTCTTTAAGGGCAAATCAAATGGGAGATCACCTGCAACCCAGAGAATACCCAGCAGAAAATTGCTCATGTTCTCCCACCAAATCCCAGCATTCAGACTCACAGAAAAACATGGCAATCTGAAAGGTTTCCTCGAAATTAGTCCGCGAGCTCTGCCGGCTAATTATTTAACCGATAGATGA	2886	0.4161	MDCNKEEALRAKVLAEQKMQSRDFPGARKFALRAQQLFPDVENIAQMLVVCDVHCSAEQKLYGNEMNWYKILQIEVTADEATIKKQYRKFALQLHPDKNKYAGAEAAFKLIGEAQRILLDREKRSELDRKCRVVMHGPSMAPHHQQKFQMNYNSVTQNTVRPNFTTFNPWQQQQQPSQTSQQGINGDRATFWTACSFCSVRYEYYREVLNRSLRCQHCNKPFIAYDVDVQGTTPATNLSQQTFTQRTYGLNHGAVKVDFGAQANLHTKKSDTESRANKGSTSDVSKKPNGKRSRKQMVESSESSDSFSSDSDDMFANDDGFTDLEKNSASREEHPRRSTRQKHQVSYNENASDDDDDESFEPSRINTGNGSSNPANEMNNQNGLASGLKDNKKGVKRDSEEDLVNRNAKIKEVRGEEVVGDSKVDEASENDVYPDPEFSDFDKDKKEDSFAAGQIWAIYDMADGMPRFYALIKKVMSPGFKLRITWLEPDPDDDDEISWSNKELPIACGKYKLGSSDIIEGHETFSHEITCEKVGRSSFNVYPRKGETWALFKNWDIKWHKDAESHRKFDFEFVEILSNYVEGDGVFVALLGKLKGFVSLFFPILKDGKPLFQIPSTQLFRFSHRVPSFRMTGQEGVGVPMGSLELDPVSLPMNLDEIELPGELIGKNSQSPSVGMSSRSSDALKFSMKSDTHASTSKINLEGQNSTLRTKAPVDHIANGSAPSASVAAAIQVPKQQFFNFDEERSKVGVGQVWASYGGQDGAPRYYGLIILIKPSPDFEVHVLNLTNCWIPDTAVKWDDKKMIVPCGRFRVIQSPVVSILKDTNSFSHQLHPVTDGNGRDKEFIIFPRKGQVWALYRKWTTKIRRADLLKMEYDIVEVVEEDNNSLGIEVLPLEKVSGYHSVFKGKSNGRSPATQRIPSRKLLMFSHQIPAFRLTEKHGNLKGFLEISPRALPANYLTDR*	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	415	444	-	-
	Amo16g0386	961	SUPERFAMILY	Chaperone J-domain	62	131	IPR036869	-
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	266	403	-	-
	Amo16g0386	961	Gene3D	DnaJ domain	64	183	IPR036869	-
	Amo16g0386	961	PANTHER	-	1	959	-	-
	Amo16g0386	961	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN	1	959	-	-
	Amo16g0386	961	Pfam	Domain of unknown function (DUF3444)	730	938	IPR024593	-
	Amo16g0386	961	Pfam	Domain of unknown function (DUF3444)	432	635	IPR024593	-
	Amo16g0386	961	Pfam	DnaJ domain	67	128	IPR001623	-
	Amo16g0386	961	CDD	DnaJ	67	120	IPR001623	-
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	363	387	-	-
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	300	315	-	-
	Amo16g0386	961	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Amo16g0386	961	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Amo16g0386	961	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Amo16g0386	961	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	285	299	-	-
	Amo16g0386	961	SMART	dnaj_3	66	123	IPR001623	-
	Amo16g0386	961	MobiDBLite	consensus disorder prediction	324	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0386	Amo-Chr16	6214924	6219050	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g0386	4	227	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	33.188	7.77e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0386	-		-	ahf:112795786	1173.69