Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0358 ATGAAAGGGAGCTTGAAGATGACGAACTTGTTGTCTCGTATCAGAAACTCCTCAAAGAAAACCAAAACTAACACTAACAAACACAGAAACAGAAAAAGATTCAAGCTTAGAAACCAGAACGCCATTTCCATTCCCAAAGACTTGCCTTCTCCCCATGAAGAAGAAGATGAAGAAGAAGAGAACGCTGAAGAAGGTTTCAAGCTCAAAAGCTCTGCCCCATTACTCACACATGGCGTTCAGCCCTTGGGGAACCTCTATCTCAACCCAGGTTCCATCAACTCCAGAGACACAGGCTTAGGTAACCTTCATACCCTTTCTGACGAGCTTGTTCTTGAGATTCTAGGGTTCTTGGATAGTACTYATTTGGGGGTTTTGTCCACTGTGAGTAAGTCCTTTTATGTTTTCACAAACCACGAACCTCTTTGGAGGAACCTTGTGTTGGAGAATCTCAATGGTGGGTTTCAGTTCAATGGGTCTTGGAAATCAACTTATGTTGCTGCTTCCTACCCTTCATTTGATATATCAAGTAATGCACTTAAAAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCCGAGTGGTTGGAGAGGGATAATATTGTTAGGAAGAGGGGCATTTCAGTTGAAGAGTTTGTGTTGAATTTCGAGGAGCCTAATAAACCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCACTGGAGAATTGGGATAGAGATTATTTGATGCAGTTGTCTGGTGATGTTAAGTTTGCAGTTGGGCCAGTTGAGATGAAGCTTGGAGACTATTTTCGCTACTCAGATCAAGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCAAAATTTGCTGAAAAAGTTCCGAAATTAGGTTCTGAATATGAAGTCCCAGTGTATTTTCGAGAGGATTTGTTTGGTGTATTAGGCAGCGAGAGACCTGACTACAGGTGGATCATTATTGGTCCTGCCGGGTCCGGATCATCTTTTCATGTTGATCCGAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGAWCAAAGAAATGGATACTATTTCCTCCTGATGTTATCCCGCCAGGCGTTCATCCTAGTCCTGATGGTGCAGAGGTTGCATCGCCYGTTTCGATAATTGAGTGGTTCATGKACTTCTACGGTGCAACAAAGAATTGGAAAAAGAAACCTGTTGAGTGTGTATGCAAAGCTGGAGAGGTTATCTTCGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATTGCCATAACCCAAAATTATGTTAGTAGGAGAAATTTGTTAAATGTGCTAGATTTTCTTAATAGGCCAAATGCTAGCACACTGGTGTCTGGAACAAGGGATCGTGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATAGATGAACTGGCCAGAAAAGAAGCAGAGAAAAAGATCCAGCAGAAGAAACTCTCATTCTGGGATTCTGTCTCAGATTCCAATGCCGGAGCTTTCAAGTTCTCTTTCTAG 1572 0.4148 MKGSLKMTNLLSRIRNSSKKTKTNTNKHRNRKRFKLRNQNAISIPKDLPSPHEEEDEEEENAEEGFKLKSSAPLLTHGVQPLGNLYLNPGSINSRDTGLGNLHTLSDELVLEILGFLDSTXLGVLSTVSKSFYVFTNHEPLWRNLVLENLNGGFQFNGSWKSTYVAASYPSFDISSNALKSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWDALENWDRDYLMQLSGDVKFAVGPVEMKLGDYFRYSDQVREERPLYLFDPKFAEKVPKLGSEYEVPVYFREDLFGVLGSERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGXKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMXFYGATKNWKKKPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLNRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELARKEAEKKIQQKKLSFWDSVSDSNAGAFKFSF* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0358 523 MobiDBLite consensus disorder prediction 1 67 - -
Amo16g0358 523 ProSiteProfiles F-box domain profile. 99 145 IPR001810 GO:0005515
Amo16g0358 523 MobiDBLite consensus disorder prediction 20 36 - -
Amo16g0358 523 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 70 521 - -
Amo16g0358 523 SUPERFAMILY F-box domain 97 165 IPR036047 GO:0005515
Amo16g0358 523 Pfam Cupin-like domain 223 441 IPR041667 -
Amo16g0358 523 SMART fbox_2 105 145 IPR001810 GO:0005515
Amo16g0358 523 Gene3D Cupin 183 443 - -
Amo16g0358 523 ProSiteProfiles JmjC domain profile. 298 458 IPR003347 -
Amo16g0358 523 Pfam F-box domain 105 143 IPR001810 GO:0005515
Amo16g0358 523 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 70 521 - -
Amo16g0358 523 SUPERFAMILY Clavaminate synthase-like 215 456 - -
Amo16g0358 523 Gene3D - 95 171 - -
Amo16g0358 523 SMART cupin_9 289 458 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0358 Amo-Chr16 5614743 5616971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0358 90 447 Glycosyltransferase AT1G78280 37.875 7.56e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo16g0358 Cupin_8 1.2e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0358 - - gmx:100782241 879.011