Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0342 ATGGGTAGTAGAGCTAGAACAGTTAACGTTAGCAGCACTGGGGACAGTAACAACGTTGTCAACGGGATGCCAAGTTACGCTCCTCCACCTCCTATGCCTTCTTCTTCTAGTTCCATGGGCATTGATGCAACTAATGTTCTTCCTTCTCGAATTTCTGAATTTGGAAACCTTGAACAATCTCTAGGATTTCGCGTTGAGGATGCCATTAATCTTAGCAGAAATCCATTGTTTAATCAACTTCAACTGAAATCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGTCAATTGCAAACTCGGATATAAACATATCTGCGGCAATTGCCGGCTCTCAAGCGTTGTCATTACAAAAGGATTCGCAACCAAATCTGGCTTCGACATCTGCTGGTCATCGTGAGAACTGGGGAGAGTCCAACATGGCAGATGCAAGCCCTAGGACAGATACTTCAACAGATGATACAGAAGATAAAAATCAAATGCCTGAAAGGGGTGAATCCAGTGAAAGATCAAAAGATAAAGCAGATCAAAAGACGTTACGGCGGCTTGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGGTTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTGCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCTCAGGAGATCAGACCCATTCAATGAGTGGAAATGGTGCTATGGCTTTTGACGTAGAGTATGCACGATGGTTGGAAGAGCATAATAGGCAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGTACTATTGTCGACAATTTCATGACGCAATTTGATGACATCTTCAGGCTCAAAGGTATTGCTGCAAAAGCCGATGTTTTCCACATTCTTTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATCGGAGGCTTTCGCTCATCCGAGCTTCTTAAACTTCTTGTAAATCAACTGGAGCCATTAACCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCGCAGCAGGCCGAAGATGCATTGTCTCAGGGAATGGATGCATTGCAGCAATCACTTGCTGAGACATTGGCGAATGGTGCACCCAACCCATCAGGCTCTTCAGGAAATGTAGCAAACTATATGGGGCAAATGGCTATGGCTATGGGAAAGCTCGGTACTCTCGAAGGGTTTCTTCGCCAGGCTGATAATCTGCGGCAACAAACATTACAACAAATGCTTCGAATTTTGACAACTAGGCAATCAGCTAGAGCTCTCCTTGCGATTAGTGATTATTTCTCGCGGCTGCGAGCTCTAAGTTCTTTGTGGCTTGCCCGACCAAGGGAATGA 1404 0.4501 MGSRARTVNVSSTGDSNNVVNGMPSYAPPPPMPSSSSSMGIDATNVLPSRISEFGNLEQSLGFRVEDAINLSRNPLFNQLQLKSNSQALGADVQFGALSKSIANSDINISAAIAGSQALSLQKDSQPNLASTSAGHRENWGESNMADASPRTDTSTDDTEDKNQMPERGESSERSKDKADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGAPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0342 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Amo16g0342 467 MobiDBLite consensus disorder prediction 124 152 - -
Amo16g0342 467 Coils Coil 201 228 - -
Amo16g0342 467 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Amo16g0342 467 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 467 - -
Amo16g0342 467 CDD bZIP_HBP1b-like 182 234 - -
Amo16g0342 467 Gene3D - 181 233 - -
Amo16g0342 467 MobiDBLite consensus disorder prediction 1 38 - -
Amo16g0342 467 MobiDBLite consensus disorder prediction 1 23 - -
Amo16g0342 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Amo16g0342 467 MobiDBLite consensus disorder prediction 124 183 - -
Amo16g0342 467 MobiDBLite consensus disorder prediction 153 183 - -
Amo16g0342 467 Pfam bZIP transcription factor 181 222 IPR004827 GO:0003700|GO:0006355
Amo16g0342 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Amo16g0342 467 PANTHER TRANSCRIPTION FACTOR TGA9 63 467 - -
Amo16g0342 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Amo16g0342 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0342 Amo-Chr16 5355239 5361805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0342 145 467 bZIP Transcription Factor Family AT3G12250 75.831 1.95e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo16g0342 DOG1 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0342 K14431 - gmx:100780071 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0342 16 5355239 5361805 Amo16g0342 16 5355239 5361805 ECH