Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0339 ATGGTGAGAGGCTCTCGATCTCAGATTTCGTTGAATTATGATAACGAAGACGAAGACATTGAAACCGTCAACTACGACAGTGGTAGTGACAATGAAGATAAGCTAGATCCGCCTGAGTCTTTCTCTTCTCGCCAATGGCCTCAAAGTTACAAAGAAGCAACTGATTCTTACTCAATTGCTGCAGCTCCGAGTCTTGGATCATTTCTTCGAGGACCGAGTGTTATCTATTCAAGCTTCGTCAACAAGTCTAAGAGTTATTTAGAATTAGATGGAAAGGCTTCTTTTCTGTCTGGTCTGGGATATGGTGGTAGTGTGCATCAAGATGGGATCACAAGACAATCAACATGGTGGGAGAAAGCTTCAATTCAAATGCAAATTCCTGAAGAATTACCCCTTGGTTATGGATGCAACCTCACTCAAACAATTTTCAATGGGATTAATGTTATGGCTGGAGTTAGCCTTCTGTCTTCACCTTTAACGGTGTCGCAAGCAGGGTGGGCCAGCTTGCTGGTGATGCTTCTTTTTGCTGTTATGTGTTTATATACAGCGGACCTTATGAGACACTGCTTTGAAAGCAGAGAAGGGATTGTCAGCTACCCAGATATAGGAGAAGCCGCATTCGGGAGATATGGCCGTCTTATTGTATCGATCATCTTGTACATTGAATTATTTTCATATTGTGTGGAATTTATCATCATGGAAGGAGATAACCTTACAGGACTGTTTCCTGGATCATCGTTGGATATTGGAAGCCTCCATTTGGACTCCAAACATTTGTTTGGAATTTTGACTGCGCTTGTCATTCTCCCTACTGTATGGTTAAAGGATCTTCGCATAATCTCTTATCTCTCAGCTGGAGGAGTAATTACTACAATGGTGATTATTATCTGTGTGATTGTTGTTGGGACAACTAATGTTGGATTCCATCCCAGTGGCTCTTTCCTTCATTGGAGTGGCATTCCATTTGCATTTGGTATCTACGGGTTTGGCTTCGCAGGACACTCTGTTTTTCCGAATATTTACCAGTCTATGGCCAACAAACGAGAATTTAGCAAGGCAATCCTTATAGTTTTCATCTTATGTGTGCTTCTATATGGACTCGTCGCAATCCCCGGATATCTCATGTTTGGTGACGAGGTTTTGTCTCAGATAACATTGAACCTGCCTGCTAATGCATTTGCTTCCAAAATTGCCCTGTGGATAATAGTACTTAGCCCCTTCACCAAATATCCTTTTTTTTAG 1242 0.4171 MVRGSRSQISLNYDNEDEDIETVNYDSGSDNEDKLDPPESFSSRQWPQSYKEATDSYSIAAAPSLGSFLRGPSVIYSSFVNKSKSYLELDGKASFLSGLGYGGSVHQDGITRQSTWWEKASIQMQIPEELPLGYGCNLTQTIFNGINVMAGVSLLSSPLTVSQAGWASLLVMLLFAVMCLYTADLMRHCFESREGIVSYPDIGEAAFGRYGRLIVSIILYIELFSYCVEFIIMEGDNLTGLFPGSSLDIGSLHLDSKHLFGILTALVILPTVWLKDLRIISYLSAGGVITTMVIIICVIVVGTTNVGFHPSGSFLHWSGIPFAFGIYGFGFAGHSVFPNIYQSMANKREFSKAILIVFILCVLLYGLVAIPGYLMFGDEVLSQITLNLPANAFASKIALWIIVLSPFTKYPFF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0339 413 Pfam Transmembrane amino acid transporter protein 138 412 IPR013057 -
Amo16g0339 413 Gene3D Amino acid/polyamine transporter I 136 408 - -
Amo16g0339 413 PANTHER AMINO ACID TRANSPORTER AVT1A 26 412 - -
Amo16g0339 413 PANTHER OS05G0424000 PROTEIN-RELATED 26 412 - -
Amo16g0339 413 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0339 Amo-Chr16 5269400 5276574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0339 26 410 Amino Acid or Auxin Permease AAAP Family AT2G41190 58.706 9.04e-161 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0339 K15015 - gmx:100790344 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0339 16 5269400 5276574 Amo16g0339 16 5269400 5276574 ECH