Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0333 ATGTCTTCTACACTTGAGGAATCTCTAAGATCTCTATCGTTGGATTACCTCAACCTGCTCATCAACGGTCAGGCCTTCAGCGACGTCACCTTCAGCGTGGAGGGCCGTCTAGTACACGCGCACCGCTGTATCCTGGCGGCAAGAAGTCTATTCTTCAGGAAATTCTTCTGCGGGCCCGATCCTCCTTCGCCCTCTGGCCTGGATCCTCCAGGACAGAGGATGAACTCGGGGTCGGGCTGCAGAACCCCTACAGGGGTAATACCCGTGAACTCCGTGGGGTACGAGGTGTTCCTGCTCATGCTGCAGTTTCTGTACAGCGGGCAGGTATCCATCGTCCCCCAGAAGCACGAGCCACGGCCCAATTGCGGCGAGAGGGGCTGCTGGCACACGCATTGCTCCTCCGCCGTCGATCTTGCTCTAGACACACTCGCCGCCGCTAGATACTTCGGCGTTGAGCAGCTCGCATTGCTAACTCAGAAACAACTAGCGAGCATGGTGGAGAAAGCTTCCATTGAAGATGTGATGAAGGTCTTGGTAGCTTCAAGAAAGCAAGACATGCACCAACTGTGGACTACATGCTCCCACCTTGTAGCCAAGTCCGGTCTCCCACCGGAGGTTCTCGCCAAGCACCTCCCCATCGACATCGTCGCCAAAATCGAAGACCTCCGTCTAAAATCCTCCCTCGCCCGCCGTACCGCCGCCTTCCTCCCCCACCACCACCACCCGGACCTCTCCGCCGCGGCAGACCTCGAGGACCAAAAGATCCGCCGGATGAGACGAGCGCTCGACTCATCCGACGTGGAGCTCGTAAAGCTAATGGTAATGGGAGAAGGGCTCAATCTCGACGACGCATTGGCTTTGCATTACGCCGTCGAGAATTGTAGCCGCGAAGTGGTGAAAGCCCTGCTGGAACTCGGGGCAGCCGATGTCAACTACCCTGCAGGTCCAGCAGGAAAAACACCGCTTCATATCGCGGCGGAAATGGTTTCGCCCGATATGGTGGCGGTCCTGCTGGACCACCACGCTGACCCAAACGTCAGAACCATCGACAACGTGACGCCATTGGACACACTAAGAACCCTAACCTCTGATTTTCTGTTCAAAGGCGCAGTCCCTGGCCTGACTCACATTGAACCAAACAAATTAAGGCTGTGTTTGGAGCTTGTTCAATCGGCGGCACTTGTTTTGTCTCGTGAAGAAGGTAACGCCAATAACAACAATGTTGCTTCTTCTACAACGCAACATCATCATCATATTTATCCTCCTTCCATGAACGAAGATCATCATAGCAGTTCAAGCAGTGGCGGCAACAATAACAATAACACCAACGTTAACTTGGATTCCAGGTTGGTGTATCTTAACCTTGGTGCCACCTTAGGTGGTGGTGGTGGTGGCGGCGCCTCCGGTCAAATGAGTTCAAGGTTGGATGGTGATGATGATAACCGTCATGGTGAAGCAGCAATGTACCATCACCACCACCACCATCATCACCATTCTCATCATGACTTCTAG 1512 0.541 MSSTLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSPSGLDPPGQRMNSGSGCRTPTGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCSSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLVASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEDLRLKSSLARRTAAFLPHHHHPDLSAAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDDALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTIDNVTPLDTLRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANNNNVASSTTQHHHHIYPPSMNEDHHSSSSSGGNNNNNTNVNLDSRLVYLNLGATLGGGGGGGASGQMSSRLDGDDDNRHGEAAMYHHHHHHHHHSHHDF* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0333 503 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Amo16g0333 503 Pfam BTB/POZ domain 18 116 IPR000210 GO:0005515
Amo16g0333 503 ProSiteProfiles BTB domain profile. 27 113 IPR000210 GO:0005515
Amo16g0333 503 MobiDBLite consensus disorder prediction 461 484 - -
Amo16g0333 503 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Amo16g0333 503 CDD BTB_POZ_NPR_plant 10 166 - -
Amo16g0333 503 Gene3D Potassium Channel Kv1.1; Chain A 2 199 IPR011333 -
Amo16g0333 503 SUPERFAMILY Ankyrin repeat 276 359 IPR036770 -
Amo16g0333 503 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Amo16g0333 503 SMART BTB_4 27 166 IPR000210 GO:0005515
Amo16g0333 503 Pfam Domain of unknown function (DUF3420) 201 259 IPR024228 -
Amo16g0333 503 Gene3D - 248 365 IPR036770 -
Amo16g0333 503 PANTHER REGULATORY PROTEIN NPR5 4 493 - -
Amo16g0333 503 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 4 493 IPR044284 GO:0099402
Amo16g0333 503 MobiDBLite consensus disorder prediction 404 443 - -
Amo16g0333 503 SMART ANK_2a 282 312 IPR002110 GO:0005515
Amo16g0333 503 SMART ANK_2a 317 346 IPR002110 GO:0005515
Amo16g0333 503 SUPERFAMILY POZ domain 10 164 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0333 Amo-Chr16 5127942 5130861 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Amo16g0333 BTB 2.9e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0333 K14508 - qsu:112012060 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0333 16 5127942 5130861 Amo12g1663 12 78091505 78097474 PCT
Amo16g0333 16 5127942 5130861 Amo02g1799 02 57123048 57128860 PCT
Amo12g1663 12 78091505 78097474 Amo16g0333 16 5127942 5130861 PCT
Amo02g1799 02 57123048 57128860 Amo16g0333 16 5127942 5130861 PCT