Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0315 ATGGGGATGGCTGCTGCAGCTGCTACAGAGTCACAGCAGTTTCATGTGTTGGCTGTTGATGACAGCCTCATAGATAGAAAGCTTATTGAGAGGCTCCTAAGAACTTCTTCTTACCAAGTTACTACAGTTGATTCTGGGACCAAAGCTTTAGAATTTCTGGGCTTGCGTGAGAATGATGATGGCACCCCAAATACACCTTCTATTTCTCCTAACAATCATCAGGAGGTGGAGGTGAATATGGTTATAACAGATTACTGTATGCCTGGGATGACCGGCTATGATTTGCTCAAGAAAATCAAGGAATCTTCATCTCTTAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGAATTAGCAGATGCTTGGAGGAAGGAGCTGAAGAATTTTTCTTGAAGCCAGTGAGGCTTTCAGATTTGAATAGGCTCAAACCACATATAATGAAGAGGAGCAAGTTGAAAGATCAAGATCAAAAGCAAGTGATACCAGAAAAGATTGATACTTTATTAGAAGTTCAAAAGCAGCATCAACCACAAGAAGAAGCACAGCCACAAGTGCAACCAAATTTAGAACAACAACAACAACAACAATCACTGCAACAAAACAACAACAATAACAATAACAGCAGCAACAAGAGGAAGAGCATGGAGCAGAGCCTTTCACCAGAGACCACTGACAGAACTAGACCAAGATACAGTGGCATAGCCACTGTGGTATGA 729 0.4143 MGMAAAAATESQQFHVLAVDDSLIDRKLIERLLRTSSYQVTTVDSGTKALEFLGLRENDDGTPNTPSISPNNHQEVEVNMVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNRLKPHIMKRSKLKDQDQKQVIPEKIDTLLEVQKQHQPQEEAQPQVQPNLEQQQQQQSLQQNNNNNNNSSNKRKSMEQSLSPETTDRTRPRYSGIATVV* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0315 242 Coils Coil 202 222 - -
Amo16g0315 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 238 IPR045279 GO:0009736
Amo16g0315 242 SMART REC_2 14 150 IPR001789 GO:0000160
Amo16g0315 242 Pfam Response regulator receiver domain 16 143 IPR001789 GO:0000160
Amo16g0315 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 8 238 - -
Amo16g0315 242 Gene3D - 15 231 - -
Amo16g0315 242 ProSiteProfiles Response regulatory domain profile. 15 151 IPR001789 GO:0000160
Amo16g0315 242 MobiDBLite consensus disorder prediction 177 234 - -
Amo16g0315 242 CDD REC_typeA_ARR 16 146 - -
Amo16g0315 242 MobiDBLite consensus disorder prediction 177 242 - -
Amo16g0315 242 SUPERFAMILY CheY-like 13 164 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0315 Amo-Chr16 5001111 5003359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0315 1 242 Response Regulator Gene Family AT3G57040 59.922 1.78e-94 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo16g0315 Response_reg 1.9e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0315 K14492 - gmx:100788079 298.901