Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0299 ATGCTTGCATTATCCTCTCCAACAAGTATGTTCCCTAATAACATGGAATGGCCCTTAGAGTTAGAAGAAGAAGAACTAAGTCATAGTCATCATGAATACTTCAACTCAGAAGAGTATCCATTACTCTCTTCTTCCATGGCCAAGAAATTTAATCACAATGCAAGCGAGCGCCACCGCCGCAAGAAGATCAATGCCTTGTACTCTTCTCTCCGGTCAATCCTCCCTGTTGCAGATCAAACCAAGAAGATGAGCATCCCAGCAACAATTTCAAGAGTGTTGAAATACATACCTGAGTTGCAACAACAGATGAATTTTATAATGTAA 324 0.4043 MLALSSPTSMFPNNMEWPLELEEEELSHSHHEYFNSEEYPLLSSSMAKKFNHNASERHRRKKINALYSSLRSILPVADQTKKMSIPATISRVLKYIPELQQQMNFIM* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0299 107 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 22 103 - -
Amo16g0299 107 Gene3D - 42 106 IPR036638 GO:0046983
Amo16g0299 107 SMART finulus 53 105 IPR011598 GO:0046983
Amo16g0299 107 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 22 103 IPR015660 GO:0003700|GO:0006357
Amo16g0299 107 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 99 IPR011598 GO:0046983
Amo16g0299 107 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 105 IPR036638 GO:0046983
Amo16g0299 107 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0299 46 103 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 72.414 2.49e-25 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0299 HLH 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0299 - - cic:CICLE_v10006413mg 102.064