Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0287 ATGGCGCGAAAACAAAAACCTGGGGCTCCAGAACCAAAACCAAAACCTTTGTCTCCAATTTCCATCGGTAACTGCGAGATCACTGTTGAGGCCAAAAACTTCACATGCAAATCCGAATCAAACAGCACCTATGCGAACAATGGAAATGCTACTGGGGATTTAAATTCCGATGATAGAGAACATGAGTTCATGCTTGTTAGTCCTAAAGATGATGCTGGGATAAGCAAATCCTACCTTCAGGAAGTTCTAGAGATGTATAAGGCAGAGCTACCAGGAATGAATTATGCTGCTAATACTGGAAAGCAATCAAAATTTCTTGAAAGATGTGTGACCAATGGGAAATATCGAACACTACTTCTTAATTCCAGTTCTGTTGAAGATTCCGGAAAGGTTATAGCTGCAATTACATATCAAATCATCCCTGCAGATACAGAATATGCAGAGATCCCACTTACAGCTGTGAGGGAAATCTACCAACGGAAGGGTTTTGGCCGTCTGTTGTTTCTGGAGCTACAGAAGAGACTTCAAAATATTGGTGTTCGTTCCATTTTCTGTTGGGGAGACAAAGAATCAGAAGGATTTTGGCTTAAACAGGGTTTTATATCAATAGCACAGGTTGATGCCAAAGGTAAAGCCCGCAGGTTTCCTGTAAAAGCTAGTATTCGCAAAGCATTATGCTTTCCTGGTGGTTCAACTCTCATGGCTTGCCATCTAAGGACAGAATTCTCAGCCGATGCAGCTGACTCTATGCACTGTCTTCCTTCACCTCTCTGTCATCATTCCTTGACACCTGCCATTGCTGAAAATGAGCAGCTGAAATGTTCAGGATTGCTGCACATTGATTTGAACCTGTCTAATCATTCAACCCATATCCTAGAAAGTAAAGATAAAATTCAAGCTGAAGGTTTGATGAAAGCTGGATCGTCAAGAGAATATGGCAAACTGTGTGGGTTTGACAGTCACAATCTCCAACATGGCTGCAGTGACATTTTTCCTTTTGTCAGAGCATATGAGGACAGAAATGCTACTGCTGCAGAAAATTCACAGGATGAAATTGATGATAACATGAAGCTTTGTCATCTTTTTCCAAAAGCTGCAAAAAGGGGCTGGGAATCCTCTATATCCTCATTGAAATCTAAAAGGGTGAAGGGAAGCCAGTTGGCTGACTGTCGATCAGATTCTAGCAACGGTTTTACATCAGAGGCTAATAGGCCCAATCCTTGTTTTCAAGAAGTCCCTCGCGTTGATCCTCTGAGTGCAGAAGTTTCTGAGAAATATATGGAGGATCATGTACAATTAGAAGCACCCAACGACAAGGAACTGCCGTTGGCTAAACAATCCTTTAGAATTATGTTAATGAATATTGCAGATGATACTAAGAGAACACAGCTTTCAAAGGTTATTGAAGACCTTGGTGGAACTGTTGCGTATGATGGAAGCATAATAACACATGTTGTCACAGGAAAAGTGAGGAAAACTATGAATTTCTGCACTGCTCTCTGTTCTGGGGCTTGGGTGCTCTCATCTAGTTGGTTAAAGCAAAGCTTTCGTGAAGGCAGATTCGTCGATGAGTTGCCTCACATACTGAATGATGAGGAGTACATGCTGAAGCACAAATCTGATTTAAAAAGTGCAATCTTCCGAGCAAAAGCTAGCCCCCATTCTTTGTTTAAGGGCTATAATGTATGCATTGCAGCTCATGTTCGAACTCCTGCCGACACTCTATCTGCTATTGTCAGGTCTGCTGGTGGTAATGTTATCAATGGGCTGGAAAAAGTAAACGAGACATCAACAACAATCTTTGTGACATGCGAAGAAGATACAGAAGAAGCAATGATGGCTGCAAAGAAAGGAATCCGGACTTTCAGCAGTGAGTGGTTTATGAACTGTGTTATGAGACAGGAGCTTGACTTGCAGGCCTCCCAATTCGCGCAGTCCTTATGA 1944 0.4203 MARKQKPGAPEPKPKPLSPISIGNCEITVEAKNFTCKSESNSTYANNGNATGDLNSDDREHEFMLVSPKDDAGISKSYLQEVLEMYKAELPGMNYAANTGKQSKFLERCVTNGKYRTLLLNSSSVEDSGKVIAAITYQIIPADTEYAEIPLTAVREIYQRKGFGRLLFLELQKRLQNIGVRSIFCWGDKESEGFWLKQGFISIAQVDAKGKARRFPVKASIRKALCFPGGSTLMACHLRTEFSADAADSMHCLPSPLCHHSLTPAIAENEQLKCSGLLHIDLNLSNHSTHILESKDKIQAEGLMKAGSSREYGKLCGFDSHNLQHGCSDIFPFVRAYEDRNATAAENSQDEIDDNMKLCHLFPKAAKRGWESSISSLKSKRVKGSQLADCRSDSSNGFTSEANRPNPCFQEVPRVDPLSAEVSEKYMEDHVQLEAPNDKELPLAKQSFRIMLMNIADDTKRTQLSKVIEDLGGTVAYDGSIITHVVTGKVRKTMNFCTALCSGAWVLSSSWLKQSFREGRFVDELPHILNDEEYMLKHKSDLKSAIFRAKASPHSLFKGYNVCIAAHVRTPADTLSAIVRSAGGNVINGLEKVNETSTTIFVTCEEDTEEAMMAAKKGIRTFSSEWFMNCVMRQELDLQASQFAQSL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0287 647 ProSiteProfiles BRCT domain profile. 552 636 IPR001357 -
Amo16g0287 647 SUPERFAMILY BRCT domain 444 524 IPR036420 -
Amo16g0287 647 Gene3D BRCT domain 554 646 IPR036420 -
Amo16g0287 647 PANTHER N-ACETYLTRANSFERASE 13 647 - -
Amo16g0287 647 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 13 647 - -
Amo16g0287 647 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 100 205 IPR016181 -
Amo16g0287 647 CDD BRCT_PAXIP1_rpt6_like 556 637 - -
Amo16g0287 647 Pfam Acetyltransferase (GNAT) family 125 200 IPR000182 GO:0016407
Amo16g0287 647 Pfam BRCA1 C Terminus (BRCT) domain 553 631 IPR001357 -
Amo16g0287 647 Pfam BRCA1 C Terminus (BRCT) domain 440 516 IPR001357 -
Amo16g0287 647 SUPERFAMILY BRCT domain 492 636 IPR036420 -
Amo16g0287 647 CDD NAT_SF 125 186 - -
Amo16g0287 647 SMART BRCT_7 440 519 IPR001357 -
Amo16g0287 647 SMART BRCT_7 554 634 IPR001357 -
Amo16g0287 647 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g0287 647 Gene3D BRCT domain 437 553 IPR036420 -
Amo16g0287 647 ProSiteProfiles BRCT domain profile. 446 529 IPR001357 -
Amo16g0287 647 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 64 222 IPR000182 GO:0016407
Amo16g0287 647 Gene3D - 60 241 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Amo16g0287 BRCT 7.1e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0287 - - aip:107645523 1283.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0287 16 4358098 4363800 Amo16g0287 16 4358098 4363800 ECH