Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0281 ATGGAAGTGGATGAAGAAAATGTTCCATCAAATACTGCTTCTGAATCCGCCATAGGACCTTCCTCTGATGTTTCCGTCAATGCTGCAACTCCACCACACCCAATTCAACCCATTATTCCACCACCCGTTATTCCCCTTTCTGCGCCTGTGCCACCTATGGCTCCAATTCCCACCATTCCTCCCCCTTCTATTGTGCCTCCCATAGCCCCAATTCCGGCCCCTCCTGTGGTGCGTCCATTGGCGCCCCTCCCTCCTCGCCCGCCGCCTATTAGACCACCTGTGGCGCAAAATGGCGAGGTTGGTTCGGAAGATTCTGATTCGGACAACGATGATGCCGGTGGGAGGGTTAACCAGGGTGCCGGGGAGTATGAGATATCGGAGGAGAGTAGGCTGGTGAGGGAGAGGCAGGAGAAAGCAATGCAGGAGCTCATGATGAAGAGGCGTGCTGCCGCTTTGGCTGTTCCGACCAATGACATGGCTGTGCGCGCTCGCCTTCGCCGGCTTGGTGAGCCCATAACTTTGTTTGGTGAGAGGGAGATGGAGAGGAGGGACAGGTTGAGGATGATTATGGCGAAGCTGGATGCCGATGGCCAGCTGGAGAAGCTGATGAAGGCTCATGAGGATGAAGAGACTGTGGCTACTGCCGGGAAGGATGGGGACGAGGAAGAGATACAGTATCCCTTTTACACCGAAGGGCCAAAGTCTCTCCGTGATGCTAGGATTGATATTGCTAAGTATTCTTTGGTTAGGGCAGCATTGCGTCTTCAACGTGCCCGGAGAAGAAAAGATGATCCGGATGAAGATGTGGATGCGGAGATGGATTGGGCATTAAAGCAGGCTGCTAATTTGAGTCTTGAATTCAGTGAAATCGGAGATGATCGACCGCTTTCTGGTTGCTCCTTCTCACGAGACGGAAAGTCGCTTGCTACTTGTTCTCTAACCGGAGCTGCCAAGTTGTGGAGCATGCCTAAAGTCATCAAATCTTGTACCTTAAAGGGACACACAGAGCGTGCGACTGATGTTGCTTATTCTCCTGTGCACAACCATTTAGCAACTGCATCTGCTGATCGGACCGCAAAATATTGGAATGACCAGGGATCTTTACTGAAGACATTCGAGGGTCATATTGACCGTCTTGCACGAATTGCTTTCCATCCATCAGGAAAGTACCTAGGCACTGCTAGCTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGTGAGGAATTGCTTCTTCAAGAAGGTCACAGTAGGAGTGTATATGGTTTAGCTTTTCATCAAGATGGATCGTTAGCTGCATCTTGTGGACTGGATGCTTTGGCTCGTGTTTGGGATCTCCGAACTGGGCGAAGCATTCTTGCACTTGAAGGTCATGTCAAGCCGGTTCTTGGCATTTGCTTTTCACCTAATGGATATCATTTAGCCACAGGCGGTGAAGACAACACTTGTCGCATTTGGGATTTGAGAAAGAAGAAATCCATGTACACCATCCCTGCTCACTCCAACTTAATATCACAAGTTAAGTTTGAGCCTCAGGAAGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCTAAGGTGTGGTCAGCCCGTGATTTCAAGCCTGTGAAGACGCTATCTGGGCATGAAGCAAAAGTTACTTCTGTGGATGTTCTTGGTGATGGCAGTTATATTGCTACTGTCTCACATGATCGTACCATAAAATTGTGGTCCACCAATATGAGTAGTGAACAAACTATGGATGTTGATTAG 1758 0.4903 MEVDEENVPSNTASESAIGPSSDVSVNAATPPHPIQPIIPPPVIPLSAPVPPMAPIPTIPPPSIVPPIAPIPAPPVVRPLAPLPPRPPPIRPPVAQNGEVGSEDSDSDNDDAGGRVNQGAGEYEISEESRLVRERQEKAMQELMMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKAHEDEETVATAGKDGDEEEIQYPFYTEGPKSLRDARIDIAKYSLVRAALRLQRARRRKDDPDEDVDAEMDWALKQAANLSLEFSEIGDDRPLSGCSFSRDGKSLATCSLTGAAKLWSMPKVIKSCTLKGHTERATDVAYSPVHNHLATASADRTAKYWNDQGSLLKTFEGHIDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHQDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVLGICFSPNGYHLATGGEDNTCRIWDLRKKKSMYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSARDFKPVKTLSGHEAKVTSVDVLGDGSYIATVSHDRTIKLWSTNMSSEQTMDVD* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0281 585 MobiDBLite consensus disorder prediction 33 94 - -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 409 - -
Amo16g0281 585 ProSitePatterns Trp-Asp (WD) repeats signature. 433 447 IPR019775 -
Amo16g0281 585 Gene3D - 273 457 IPR015943 GO:0005515
Amo16g0281 585 PANTHER BNAC04G01920D PROTEIN 120 577 - -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 497 IPR001680 GO:0005515
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 363 - -
Amo16g0281 585 CDD WD40 295 573 - -
Amo16g0281 585 PANTHER WD40 REPEAT PROTEIN 120 577 - -
Amo16g0281 585 SMART WD40_4 282 321 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 534 573 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 365 404 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 491 531 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 449 488 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 324 363 IPR001680 GO:0005515
Amo16g0281 585 SMART WD40_4 407 446 IPR001680 GO:0005515
Amo16g0281 585 SUPERFAMILY PRP4-like 139 194 IPR036285 -
Amo16g0281 585 SUPERFAMILY WD40 repeat-like 284 572 IPR036322 GO:0005515
Amo16g0281 585 PRINTS G protein beta WD-40 repeat signature 391 405 IPR020472 -
Amo16g0281 585 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Amo16g0281 585 PRINTS G protein beta WD-40 repeat signature 475 489 IPR020472 -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 540 IPR001680 GO:0005515
Amo16g0281 585 SMART pr04_2 156 209 IPR014906 -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Amo16g0281 585 MobiDBLite consensus disorder prediction 1 130 - -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 363 IPR001680 GO:0005515
Amo16g0281 585 ProSitePatterns Trp-Asp (WD) repeats signature. 391 405 IPR019775 -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 456 490 - -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 455 IPR001680 GO:0005515
Amo16g0281 585 ProSitePatterns Trp-Asp (WD) repeats signature. 475 489 IPR019775 -
Amo16g0281 585 Gene3D - 132 200 IPR036285 -
Amo16g0281 585 Pfam pre-mRNA processing factor 4 (PRP4) like 161 187 IPR014906 -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 531 - -
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 413 IPR001680 GO:0005515
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 451 - -
Amo16g0281 585 Gene3D - 458 584 IPR015943 GO:0005515
Amo16g0281 585 MobiDBLite consensus disorder prediction 7 29 - -
Amo16g0281 585 Pfam WD domain, G-beta repeat 536 573 IPR001680 GO:0005515
Amo16g0281 585 Pfam WD domain, G-beta repeat 454 488 IPR001680 GO:0005515
Amo16g0281 585 Pfam WD domain, G-beta repeat 415 446 IPR001680 GO:0005515
Amo16g0281 585 Pfam WD domain, G-beta repeat 366 404 IPR001680 GO:0005515
Amo16g0281 585 Pfam WD domain, G-beta repeat 330 363 IPR001680 GO:0005515
Amo16g0281 585 Pfam WD domain, G-beta repeat 494 531 IPR001680 GO:0005515
Amo16g0281 585 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 582 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0281 387 572 U-box Gene Family AT2G33340 23.711 1.32e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0281 K12662 - gmx:100788948 872.078
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0281 16 4267251 4270230 Amo16g0281 16 4267251 4270230 ECH