Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0268 ATGGATCACAGAACAAAGTCGAAGGACTCGCTCAACTACTCTACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTCGATTATTACGAAAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTAGGGCTGTTGCAAATTACAGTAATGGGAATATGCGTGGTAAGGAGGTGAGTTCGGCGAAGAAGAGGAAGTGGTCTCAGAACGGGGACAATGAGGAAAGGAGCTGTTATTACAGGACACACGTGACGGAAGAGCGATATAGGTCGATGCTTGGAGAGCATATTCAGAAATACAAGAGGAGGTTTAATGATAACTCATCTAGTCCTGCTCAAAATCAGGTTGTTGCTCCTCTTCTCAAAAGTAGCGTGGGTTCAAAAGCTCACAAGTCAGGGACTGAACTCAGGAGGGGACTACATGCTGCAGAGACTACATCTGAGTGGATGAATGGTTCCAATTCTCAGAAAATGGGAAATTACCGTGATTCCGATCTCTTGAAGCAATATTGCCCCAATAGGACAATATATGAACCTGCTTTTTTGGATATTGGGGATGGTATCACTTACAAGATTCCTCCAAGATATGATAAGTTAGCTGCATTGCTCAACCTTCCTACCTTCTCAGAGATCCATGTTCAGGATTTCTACTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGAAATGATGGCTGCTGATAAAAGATTTGGGAACAGAAACCGGATAGGCATGGGGGAAACCATACCCCACTATGAATCACTTCAGGCACGATTGAAGGTCATGTCAGCTTCTAATTCACCTCATAAGTTCAGTCTGAAAGTATCAGACTTGAACTCCTCCATTCCCGAGGGGGCTGCTGGAAACATCAAGCGATCTATTCTGTCCGAGGGTGGTGTATTGCAGATTTACTATGTGAAGGTTTTGGAGAAAGGGGACACTTATGAGATCATTGAACGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGAATTGGTAAGATTTGGGTGAACATTGTTAGAAGAGATATACCCAAGCATCAGAGGAACTTCACTGCTTTGCATCGAAAGCAGCTTGTTGATGCCAAGAGGTTTGCTGAGAACTGTCAGAGAGAGGTTAGGCTGAAAGTGAGTAGATCAATTAAATGGACGCGGACTGCTGGTATACGCACCCGAAAACTTGCTAGAGACATGTTGCTATTCTGGAAGCGAATAGATAAGGAGATGGCAGAAGTACGGAGACGAGAGGAGAAAGAAGCCGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGTGAAGCAAAGCGGCAGCAGCAAAGGCTGAATTTTCTTATACAGCAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAGCTTGATATCAGAAGCTTTACCCATGGGTGATGAAAGTACAAATGACCAAGATCTAATTGACTCTTCAACTTTTGGGCGTAATGAGGAGGAAGATCATGAAGAGGCTGAGTTGAAGAAGGAAGCTCTGAAGGCTGCTCAAGAAGCTGTTTCCAAACAGAGAAGATTGACAAGTGCTTTTGACACTGAGTGCTTGAGGCTGCGCCAGGCTGATGAAGCTGATTTACTCCAACCAGAAGTTGCTGGAGCAAGTAATATTGATTTACAAACCCCCTCAACCATGCCAGTGGCCTCCACAGTTCGGACACCAGAATTGTTTAAAGGTGTTCTCAAAGAGTATCAGCTAAAAGGTCTTCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCGGACGAGATGGGTCTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATCTAGCTGAGGAGAAAAACATATGGGGACCTTTCCTGGTTGTTGCACCTGCATCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTGAAAAGACTTCCTTATTGGGGTGGGGTTGCAGAGCGGTCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTATCGCAGGGAAGCCAAATTTCATGTCCTCATCACAAGCTATCAGTTATTAGTTACTGATGAGAAGTTTTTTCGTCGTGTAAAATGGCAGTACATGGTTTTAGATGAAGCCCAGGCAATTAAAAGTTCTGCCAGTATAAGATGGAAGACGCTCCTAAGTTTTAATTGTCGGAATCGCTTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGTCTCTTTTGCATTTCATTATGCCAACATTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCTGAACATGGGGGTACTTTGAATGAGCACCAACTGAATAGATTGCATTCAATCTTAAAGCCGTTCATGCTGCGCCGTGTTAAAAAAGATGTAATCTCTGAGCTGACCACTAAAACTGAAGTTACAGTTCACTGCAAGTTGAGTTCTCGACAACAGGCTTTCTATCAAGCAATTAAAAACAAGATATCTCTCGCTGAACTGTTTGATAGTAATCGTGGACAGCTCAATGAGAAGAGAATTTTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAATTATTTGAAAGGAGTGAGGGAAGCACATACCTTCATTTTGGAGAGATTCCAAATTCTCTTCTACCTCCTCCATTTGGGGAGTTGGAGGATGTATACTATTCTGGGGGTCACAACCCCATTTCATACGAGATACCAAAACTTGTGTATCGAGAAATTATGCAGAGTTCTGAGACTCTTGGTTCAGCTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCTGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATCGATCTGTTTTCCCAGAAGGTATGTGTGTTAGCAGTGGAGGCTTTGGTTTTACCCATATGACGGATTTGTCTCCACAAGAGGTGGCATTTTTGGCTAATGGTTCTTTTATGGAGCAATTGTTATTTTCTATGATGAGATCGGATAAAAAATTCATCGATGAAGTTGTAGATTTTCTTGTTGAGACCATAGATGATGATGATCCAGAATGTAGTAATCTTGAGAAAGGGAAAGTGAGAGCTGTTACTCGAATGTTATTGGTGCCATCAAAATCTGAAACTCAGTTTCTTCAAAGAAGATTTCCAACTGGGCCCAGCCATGCTCCTTTTGAGGCCTTGGTAGTCTCAGATCAGGATAGACTTTTGTCAAATGCAAGGCTGCTTCACTCGGCATACACATATATCCCACGGAGTAGAGCTCCCCCAGTTGGTGTTCACTGCTCTGATAGAAACTTTTACTATAAAATGATTGAAGAATTCCACAATCCTTGGATTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGAATGTAACGGGCCGAGAATGCCAGATTGTCATCATTTAATTGAAGAAATAGATTCTGAACTACCTGTTTCTCAGCCTGCTCTACAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGTGGAATTTTGACCCAGCAAAGTTGTTGACTGACTCTGGGAAGCTTCAAACGCTTGATATATTATTGAGACGCTTAAGAGCTGAAAATCATCGTGTTCTTTTGTTTGCCCAGATGACTAAGATGCTGAACATTTTGGAGGACTATATGAACTACAGAAAATATAGGTATTTCAGACTTGATGGATCATCTACTATACAAGATCGTAGAGACATGGTCAGAGACTTCCAGAATAGGCCTGATATTTTTGTGTTCTTGTTGAGTACAAGAGCTGGTGGACTTGGCATCAACTTGACAGCTGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTAGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAGAGATGTTACTGTTTACCGACTTATATGCAAAGAGACAGTTGAAGAAAAAATTCTTCATAGAGCAAGCCAGAAAAGTACTGTACAAAACCTTGTAATGACTGGGGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTTTCTTTGCTTCTAGATGATCCCCAGTTGGAGCAGAAATTAAAGGAAATTCCCCTCCAGGCAAAGGATAAGCAAAAGAAAAAACAACCTGCAAGGGGCATTTTCTTAAATGAAGAAGGTGATGCATCTCTTCAAGATTTAACCAACGCTGTACCCCAGGGTACTGTGGATAATGATCTTACTGTGGACACAGAGGGTTCAAAGTCTGCTAATAAAAAGAGAAAAGCTGCCTCGGATAAGCAGACTTCAAGGCTGAAGAGTTCTCAGAAGATAAGTGATGTCGGTATTACAGCCATGGACGACGAATTGGATGACCTGAACACTGATCCAGTTGGCCAGAAGCCCAAGAGACCAAAAAGGTTAAAGAAGAGTGTTAATGAGAGGTTCGAAGAGGCCTCTATTGGCACGGCCACTGCCGTCACAGAGCAGACCCAATATCCACCTCCACAGGATTTCACATCCATCGTTCCTAGAGCAGAAACGAGCCTAGACCCCTAA 4587 0.4221 MDHRTKSKDSLNYSTLFNLESLMNFQLPEQDDDFDYYENSSQDESRDSQGRAVANYSNGNMRGKEVSSAKKRKWSQNGDNEERSCYYRTHVTEERYRSMLGEHIQKYKRRFNDNSSSPAQNQVVAPLLKSSVGSKAHKSGTELRRGLHAAETTSEWMNGSNSQKMGNYRDSDLLKQYCPNRTIYEPAFLDIGDGITYKIPPRYDKLAALLNLPTFSEIHVQDFYLKGTLDLGSLAEMMAADKRFGNRNRIGMGETIPHYESLQARLKVMSASNSPHKFSLKVSDLNSSIPEGAAGNIKRSILSEGGVLQIYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERIGKIWVNIVRRDIPKHQRNFTALHRKQLVDAKRFAENCQREVRLKVSRSIKWTRTAGIRTRKLARDMLLFWKRIDKEMAEVRRREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSSLISEALPMGDESTNDQDLIDSSTFGRNEEEDHEEAELKKEALKAAQEAVSKQRRLTSAFDTECLRLRQADEADLLQPEVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRREAKFHVLITSYQLLVTDEKFFRRVKWQYMVLDEAQAIKSSASIRWKTLLSFNCRNRLLLTGTPIQNNMAELWSLLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLHFGEIPNSLLPPPFGELEDVYYSGGHNPISYEIPKLVYREIMQSSETLGSAVGHGVCRESFLKHFNIFRPENVYRSVFPEGMCVSSGGFGFTHMTDLSPQEVAFLANGSFMEQLLFSMMRSDKKFIDEVVDFLVETIDDDDPECSNLEKGKVRAVTRMLLVPSKSETQFLQRRFPTGPSHAPFEALVVSDQDRLLSNARLLHSAYTYIPRSRAPPVGVHCSDRNFYYKMIEEFHNPWIKRLFVGFARTSECNGPRMPDCHHLIEEIDSELPVSQPALQLTHSIFGSSPPMWNFDPAKLLTDSGKLQTLDILLRRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSTIQDRRDMVRDFQNRPDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDPQLEQKLKEIPLQAKDKQKKKQPARGIFLNEEGDASLQDLTNAVPQGTVDNDLTVDTEGSKSANKKRKAASDKQTSRLKSSQKISDVGITAMDDELDDLNTDPVGQKPKRPKRLKKSVNERFEEASIGTATAVTEQTQYPPPQDFTSIVPRAETSLDP* 1529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0268 1528 MobiDBLite consensus disorder prediction 32 80 - -
Amo16g0268 1528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1204 1354 IPR001650 -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 1413 1428 - -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 1429 1444 - -
Amo16g0268 1528 Gene3D - 582 823 IPR038718 -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 46 64 - -
Amo16g0268 1528 SMART helicmild6 1230 1313 IPR001650 -
Amo16g0268 1528 ProSiteProfiles DBINO domain profile. 353 478 IPR020838 GO:0003677
Amo16g0268 1528 Gene3D - 824 894 IPR027417 -
Amo16g0268 1528 Gene3D - 1173 1413 IPR027417 -
Amo16g0268 1528 SMART ultradead3 582 777 IPR014001 -
Amo16g0268 1528 Coils Coil 502 529 - -
Amo16g0268 1528 Pfam Helicase conserved C-terminal domain 1204 1313 IPR001650 -
Amo16g0268 1528 PANTHER HELICASE SRCAP-RELATED 16 1491 - -
Amo16g0268 1528 Coils Coil 425 464 - -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 1413 1528 - -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 65 80 - -
Amo16g0268 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 814 IPR027417 -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 1499 1520 - -
Amo16g0268 1528 Pfam DNA-binding domain 348 476 IPR020838 GO:0003677
Amo16g0268 1528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 598 769 IPR014001 -
Amo16g0268 1528 MobiDBLite consensus disorder prediction 135 162 - -
Amo16g0268 1528 CDD SF2_C_SNF 1192 1324 - -
Amo16g0268 1528 Pfam SNF2-related domain 601 888 IPR000330 GO:0005524|GO:0140658
Amo16g0268 1528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1381 IPR027417 -
Amo16g0268 1528 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1491 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0268 Amo-Chr16 4038515 4048545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0268 639 887 RAD5 or RAD16-like Gene Family AT1G61140 23.871 2.45e-11 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo16g0268 SNF2_N 3.4e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0268 K11665 - gmx:100780615 2482.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0268 16 4038515 4048545 Amo16g0268 16 4038515 4048545 ECH