Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0263 ATGGATAGCCTCCTCAGCATGAAGGACTTTGAATTAGAGCCCAAGAATCCCTCCCCCGAAGCCCTCCGCCGCTGGAGATCCGCCGTCAGCTTAGTCAAGAACCGCCGCCGCCGATTCCGCATGGTCGCCGACCTCGACAAACGCGACCAAGCTCAACAGATTAAGCACGGTATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAAAAGGCAGCATTGCAATTCATTGATGCGGGTAGTCGAGTTGAATATAAGCTACCAGAAGAGGCAAGACAAGCTGGTTTTGGCATTCATCCCGATGAAATCGCAGCTATTGTTCGTGGACATGATTATAAGAACTTGATGAATATTGGTGGAGTTGAAGCTATTACAAGGAAACTTGCAGTCTCAGTGGATGAAGGTATCAGTGAAGAGAGTATAGATCCCAGACAAAAGGTTTATGGAGTCAACCGTTATACAGAGAAACCTTCTAGAAGCTTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTCTAATCATTCTTATAGTTTGTGCTGTAGTTTCTATTGGTGTAGGGATCGCTACTGAAGGGTTTCCAAAAGGAACATATGACGGTGTAGGAATCATACTTAGTATTTTTTTGGTTGTCATTGTTACTGCTGTCAGTGACTACCAGCAATCCCTACAGTTCAGAGATTTAGATAAAGAGAAGAAGAAGATCTTTGTTCATGTCACCAGGGGTGGAAAAAGGCAGAAGATCTCAATATATGATATAGTAGTTGGTGATATCGTTCATTTGTCGACCGGAGATCAAGTTCCAGCTGATGGGCTGTATATATCAGGATACTTTTTACTTATAGACGAATCGAGTTTGTCAGGTGAGAGTGAACCTGTAAATGTGAATGAAGAAAAGCCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGAAAGATGTTAGTTACGACAGTTGGCATGAAGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAGGGTGGAGAGGATGAGACACCATTGCAGGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAAATTGGTTTATCTTTTGCTTGCCTGACATTCGTGGTGTTGACAATCAGATTTCTTGCTGAGAAAGCAATTAATGGTGACATATCAAGTTGGTCTTCAAATGATGCATTGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTGGTTGCGGTTCCTGAAGGATTACCATTGGCTGTGACACTCAGTCTTGCTTTCGCTATGAAAAAATTAATGAATGACAAGGCACTTGTGAGACACCTTTCTGCCTGTGAGACTATGGGTTCAAGTAGTTGCATTTGCACAGATAAGACAGGGACATTAACCACTAACCATATGGTAGTCAATAAAATATGGATATGCGAAAAAGCGACGCATATAAAAAGTAAAGAGAGTGCAGATGAACTGAAAACAACTATACCTGATGGAGTACAAAGCATCCTTTCTCAGGCTATATGTCAAAATACATCTGCTGAAGTAGTTAAGGATAAAGATGGAAATAACACAATATTGGGAACTCCAACAGAATCAGCATTGATGGAATTTGGCTTGCTTTTAGGTGCTGATTTTGATGAACAGCGTAGAGTGTATAAGATACTCAAGATTGAGCCTTTCAATTCAGTGAGGAAGAAGATGTCTGTGCTTGTGGCTCTTCCGGATGGAGGAGTCAGAGCTTTCTGCAAGGGTGCATCAGAGATAATATTAAAAATGTGCAACAAAATCATTGACCACAATGGAGAAGTTGTTGACCTTCCTGAAGACCAAGCAGATAATGTAACTGCTGTTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGAAACCGAAGGGGATATCAATATCCCTGACAGTGGCTATACTCTGATAGCCGTAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTAAGGGAAGCAGTTCAAACTTGTTTAGCCGCCGGAGTAACTGTCCGGATGGTCACTGGTGATAACATTCATACAGCCAGAGCTATAGCTCAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCAATTGAAGGACCAGAATTTCGTAACTTGTCTCCAGAGCAAATGAAGGATATTATACCAAGAATTCAGGTGATGGCACGATCCTTACCACTTGACAAGCATAAGTTAGTAACCAATTTGAGGAGTATGTTTGGTGAGGTTGTTGCTGTTACCGGCGATGGAACCAACGATGCTCCTGCATTGCATGAATCAGACATTGGACTTGCTATGGGCATAGCTGGAACAGAGGTTGCAAAAGAAAATGCTGATGTGATTATAATGGATGACAATTTCACCACCATTGTCAATGTTGCCAAATGGGGAAGAGCAGTGTACATAAACATTCAAAAATTTGTGCAGTTCCAGTTAACGGTTAACATTGTTGCTCTGGTTATCAACTTTGTTTCAGCATGCATCACAGGATCTGCACCACTCACAGCTGTGCAGTTGCTTTGGGTTAACTTGATTATGGACACATTGGGTGCATTAGCCCTTGCTACTGAACCTCCTAATGAAGGACTTATGAAAAGGGCCCCAGTTACAAGGGGAGCAAGCTTTATAACCAAAACCATGTGGAGGAATATCATTGGTCAAAGTATATATCAGTTAATTGTCCTTGGAATTCTAACCTTTGATGGGCTGAAGCTACTCAATATTAGTGGTCCAGATGCAACTAAAGTGCTCAACACCTTGATATTTAACTCCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGACATGGAAAAGATAAATGTATTCAGAGGCATGTTTGGGAGCTGGATATTCTTGGGGATAATTTTCGCGACGGCGGTGTTTCAAGTGATAATAGTTGAGTTCTTGGGAACTTTTGCCAGCACTGTCCCTCTAAACTGGCAAATGTGGTTACTCAGTATTGCAATTGGTGTAGTTAGCATGCCGCTTGCTGCTATAATCAAGTGCATTCCAATTGAAAGAGCTTCTGCTATTAAGCATCACCATGATGGATATGAGGCACTGCCTTCTGGTCCTGAACTAGCTTAA 3111 0.4179 MDSLLSMKDFELEPKNPSPEALRRWRSAVSLVKNRRRRFRMVADLDKRDQAQQIKHGIKEKIRIALYVQKAALQFIDAGSRVEYKLPEEARQAGFGIHPDEIAAIVRGHDYKNLMNIGGVEAITRKLAVSVDEGISEESIDPRQKVYGVNRYTEKPSRSFLMFVWDALQDLTLIILIVCAVVSIGVGIATEGFPKGTYDGVGIILSIFLVVIVTAVSDYQQSLQFRDLDKEKKKIFVHVTRGGKRQKISIYDIVVGDIVHLSTGDQVPADGLYISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMLVTTVGMKTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLSFACLTFVVLTIRFLAEKAINGDISSWSSNDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSSSCICTDKTGTLTTNHMVVNKIWICEKATHIKSKESADELKTTIPDGVQSILSQAICQNTSAEVVKDKDGNNTILGTPTESALMEFGLLLGADFDEQRRVYKILKIEPFNSVRKKMSVLVALPDGGVRAFCKGASEIILKMCNKIIDHNGEVVDLPEDQADNVTAVINGFASEALRTLCLAVKDINETEGDINIPDSGYTLIAVVGIKDPVRPGVREAVQTCLAAGVTVRMVTGDNIHTARAIAQECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHKLVTNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVAKWGRAVYINIQKFVQFQLTVNIVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNEGLMKRAPVTRGASFITKTMWRNIIGQSIYQLIVLGILTFDGLKLLNISGPDATKVLNTLIFNSFVFCQVFNEINSRDMEKINVFRGMFGSWIFLGIIFATAVFQVIIVEFLGTFASTVPLNWQMWLLSIAIGVVSMPLAAIIKCIPIERASAIKHHHDGYEALPSGPELA* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0263 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 374 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 389 486 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 840 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 112 1014 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo16g0263 1036 CDD P-type_ATPase_Ca_PMCA-like 143 885 - -
Amo16g0263 1036 Gene3D - 17 78 - -
Amo16g0263 1036 Pfam Cation transport ATPase (P-type) 505 591 - -
Amo16g0263 1036 Pfam Cation transporting ATPase, C-terminus 837 1010 IPR006068 -
Amo16g0263 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 457 661 IPR023299 GO:0000166
Amo16g0263 1036 SMART Cation_ATPase_N_a_2 113 188 IPR004014 -
Amo16g0263 1036 SUPERFAMILY HAD-like 450 857 IPR036412 -
Amo16g0263 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Amo16g0263 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1013 IPR023298 -
Amo16g0263 1036 SFLD p-type atpase 433 804 IPR044492 -
Amo16g0263 1036 PANTHER CALCIUM-TRANSPORTING ATPASE 50 1019 - -
Amo16g0263 1036 Gene3D - 134 334 - -
Amo16g0263 1036 SUPERFAMILY Calcium ATPase, transduction domain A 236 332 IPR008250 -
Amo16g0263 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 453 459 IPR018303 -
Amo16g0263 1036 SFLD Haloacid Dehalogenase 433 804 - -
Amo16g0263 1036 Pfam Cation transporter/ATPase, N-terminus 118 183 IPR004014 -
Amo16g0263 1036 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 PRINTS H+-transporting ATPase (proton pump) signature 752 768 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 PRINTS H+-transporting ATPase (proton pump) signature 784 809 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo16g0263 1036 Pfam E1-E2 ATPase 236 429 - -
Amo16g0263 1036 PANTHER CATION TRANSPORTING ATPASE 50 1019 - -
Amo16g0263 1036 Gene3D - 166 1011 - -
Amo16g0263 1036 Gene3D - 448 797 IPR023214 -
Amo16g0263 1036 Gene3D - 461 656 IPR023299 GO:0000166
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 282 296 - -
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 451 465 - -
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 649 660 - -
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 671 681 - -
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 752 771 - -
Amo16g0263 1036 PRINTS P-type cation-transporting ATPase superfamily signature 776 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0263 Amo-Chr16 3996291 4005831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0263 58 1033 Primary Pumps ATPases AT3G57330 74.411 0.0 1497
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0263 K01537 - gmx:100798481 1713.35