Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0259 ATGGATCTGCAGAAATTGAATCTCGATAATACAAATGAAACCGAAAACTCTTTTGTGAAGGACCAAAACTATGCACATATTGAATCTTTATTGAGAACCCAACCAAGAGAAGTTCAAGTAATTGGAGTCTGGGGCATGGGCGGTATAGGTAAGACAACCATTGCTGCTGCTATATTTGAAGAGTTCTCTCCCAAATATGAAGTCAATTGTTTCTTGGCAAATGTAAGAGAAGAATCATCAAAGCATGGATTCAAATACATATTCAATAAGCTTCTTTGTGAGTTACTACAAGAAGATATTCATATTGATACTCCCACAATCATATCCTCTACTATTATGAGTAGATTGAGGCACAAGAAAGCTCTTATTGTTCTAGATGATGTGAATAGTTCTGATCTTCTTGATAATTTGCTCGGAGTAGGACACGATTATCTAGGAGTTGGTAGCAGAGTCATTGTGACAACTCGAGATAGGCATGTCCTTACATGTAGAGCCGTTGACCAAATTCTTGAAGTCAAGGAAATGAACTATCATAACTCCCTTAAACTCTTTAGCTTGAATGCCTTTAACCAGATCCATCCACCTGAGAATGGATTCCAGGAGCTATCGAAGAGAGCAGTTGCTTACGCCAAAGGCAACCCTTTAGCTCTAAAGGTTTTGGGATCGTTTCTTCGTTCCAAAAGTGAAAATGAGTGGGATAGTGCCCTAACAAAATTGAAAGGAACTCCTGATGCAAATGTTCATAAGGTGTTGAGATTGAGCTTTGATGAATTGGATGATGCAGAAAAGAATATATTTCTAGACATTGCATGTTTCTTCAAAGGGGAAGAAAAATATAAAGTAATAATGATATTGAATGCCTGTGGTTTCCATGCAAATATAGGGATAAGAAACCTTTTAGACAAGGCTCTGATAACAATAACCAAAATGAAGAGAATACAAATGCATGACTTGATACAAGAGATGGGTCAAGAAATTGTCTGTGAAGAGTCTGCTAAAATTCCTGGGGGACAAAGTAGATTGTGGAACCCTGATGAAGTTTGTGACATACTGAAGAATGATAAAGGGACTGATGCAATTGAAAGCATATTCTTGGACATGACTCAAACCACAGATCTATATATAAGCTCCAATGCATTTAGAAAGATGCCAAATCTAAGGTTACTTGCCTTTGCTGATAGCACTGGTCATGGGGAAAGGAGAACAAACAATAATTTGTATCTTCCAACAAATCTTGAATTACCTAATAGCTTGAGATATATTCAGTGGGATGGATATCCATTGAAATCTTTACCATCCATTGGTTGGCCTAAAAACTTGGTTGAGATTTCCATGACATACAGCAATGTCGAGAAACTTTGGGACGGAGTACAGAATTTACCAAGTTTAGAGATAATTGACCTTTGA 1407 0.3724 MDLQKLNLDNTNETENSFVKDQNYAHIESLLRTQPREVQVIGVWGMGGIGKTTIAAAIFEEFSPKYEVNCFLANVREESSKHGFKYIFNKLLCELLQEDIHIDTPTIISSTIMSRLRHKKALIVLDDVNSSDLLDNLLGVGHDYLGVGSRVIVTTRDRHVLTCRAVDQILEVKEMNYHNSLKLFSLNAFNQIHPPENGFQELSKRAVAYAKGNPLALKVLGSFLRSKSENEWDSALTKLKGTPDANVHKVLRLSFDELDDAEKNIFLDIACFFKGEEKYKVIMILNACGFHANIGIRNLLDKALITITKMKRIQMHDLIQEMGQEIVCEESAKIPGGQSRLWNPDEVCDILKNDKGTDAIESIFLDMTQTTDLYISSNAFRKMPNLRLLAFADSTGHGERRTNNNLYLPTNLELPNSLRYIQWDGYPLKSLPSIGWPKNLVEISMTYSNVEKLWDGVQNLPSLEIIDL* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0259 468 SUPERFAMILY "Winged helix" DNA-binding domain 247 352 IPR036390 -
Amo16g0259 468 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 4 460 - -
Amo16g0259 468 Pfam NB-ARC domain 27 249 IPR002182 GO:0043531
Amo16g0259 468 Pfam Leucine Rich Repeat 439 458 IPR011713 -
Amo16g0259 468 Gene3D - 2 169 IPR027417 -
Amo16g0259 468 Gene3D Ribonuclease Inhibitor 298 468 IPR032675 -
Amo16g0259 468 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4 460 IPR044974 GO:0006952
Amo16g0259 468 SUPERFAMILY L domain-like 315 468 - -
Amo16g0259 468 Gene3D - 174 259 IPR042197 -
Amo16g0259 468 PRINTS Disease resistance protein signature 210 224 - -
Amo16g0259 468 PRINTS Disease resistance protein signature 115 129 - -
Amo16g0259 468 PRINTS Disease resistance protein signature 458 468 - -
Amo16g0259 468 PRINTS Disease resistance protein signature 40 55 - -
Amo16g0259 468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 269 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0259 Amo-Chr16 3922743 3924385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0259 21 456 WRKY Transcription Factor Family AT4G12020 39.498 1.77e-84 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0259 - - ahf:112777718 922.154