Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0258 ATGTTTATTCTGCTCCTACACCTCCACCTCCACCTCTCACGAAACACTCGTAACGGCTTCACTAGCCACCTTCACTACGCTCTGTGCAGAAACCAAATCGAAACATTCATAGATTACAGAATTGAGAAAGGTGGTGAGATCTGGGAAGAACTCGTGCAAGCTATAAGAGAGTCTTCGGTGTATCTGATCATCTTCTCAGAACACTATGCGTCTTCAAAGTGGTGCTTGCGGGAACTTGCTGAGATCATAGAACTCACAAACATGGTGGAAAAGGGACACCACCATATTATTCCTGTGTTCTACAGGATTGAACCCACGCATGTTCGGAAGCAGACGGGAAGCTACTACAGTGTGTTCGCAGAGTATGACAGAAATTTGGATAATCGCCTTGTGCGCCAGTGGAGGAAGGCACTCTTCCAAGCAGCCAATATCTCCGGCTTCGAATATAATCATCACCATAGTAGGACTGAATCTGACCTCATTGAAGGCATAGTCCAAATGATTATCCGAAAATTGGATCAGAAATACACAAGTGAACTCAGGAGCCCTTTTATACATGACCAAAATTATGCATCCATTGAATCTGTTTTGATCAACTCACAGGATGTTCGAACCATTGGAATTTGGGGCATGGGCGGCATAGGAAAAACAACTATTGCGGCTGCCATTTTTCAAGAGTTCTCTCCCAAGTATGAAGGTAGTTGTTTCTTGGCCAATGTAAGAGAAGAATCTTCAAGGCATGGCCTCAACTACATTTTCAATAGACTTCTTTCTGAGTTGCTGCAGGAACATGTTCATATTACCACTCCAAAGATTGTGTCTTCTGCTATAATCCGCAGATTGAGGCGTAAGAAAGTTTTCATTGTGCTAGATGATGTGAATACTTCTGAGCTTTTAGAAAATTTGCTTGGAGTGGGACAAGATTATCTTGGACTTGGTAGCAAAGTTATTGTTACCACTAGAGATAAGCATGTTCTTCTGAGTAGATCAGTTGATCACATCCATGAAGTCATGGAAATGAATGAGGAGAACTCTCTCAAACTGTTTAGCTTGAATGCCTTCAACAGAAACCATCCTCCTGAGAACGGGTACTGGGATCTATCAAAAAGGGCACTTGCTTATGCCAGAGGAAATCCTTTAGCATTGAAAGTTTTGGGATCATTTCTTCATTCCAAAACTGAAAAGGAATGGGACAATGCATTGACAAAACTAAAGAGGATTCCTAATGCAGATATTCAGAAGGTGTTGAGGTTGAGCTTCAATGAATTAGATGATACAGAGAAGGATATATTTCTAGATATTGCATGCTTTTTTAAAGGAGAAGAGAAAGAAAAAGTGATAAGAATATTGAATGAGTGTGGCTTCTTTGCAGATATTGGAATAAGAAACCTTTTAGACAAGGCTCTTATATCAATAGCTACCAATAAAAGCATACAAATGCATGACTTGATACAGGAAATGGGTCACAAAATTGTATGTGAAGAATCTCTCAAGAACCCTGGAAAGCGTAGCAGAGTGTGGCACCCAGATGAAGTTTGCGATATATTAGAGAATGATAAAGGATCCGCTACGATTGAAACCATATACTTGGATATGACTCAGCGGACAGAAATATGTATTAGCTCCGGTGCATTTAGAAAGATGCCAAAGCTAAGGTTACTTGCTTTTGCTAGCAGCAGCATTGATTATGGGAGAAAAAGAGTTGATTATACATTGAGTCTTCCAACAAACTTGGAGTTGCCTAATAACTTGAGATACATTCAATGGGATAGATGCCCATTAAAATCTCTATCAACTACTTCTTGGCCTAACAAGCTTGTTGAACTCTCCATGCCATACAGTAACGTTGAAAAGCTTTGGGATGGCCCACAGAGTTTACCGAGCTTGGAGGAAGTTTTTCTCAGTGGTTCGAAGCGAATGATAGAGTGTCCAGATTTTTCAGGTGCCCCAAATCTAAAAACAATATGGCTCAATCAATGTGAAAGCTTGCCTCATGTTCATCCTTCTATTTTCTCCCTTCCAAAACTTGACTATTTAGCTGTCTACGGATGCAAAAAGCTTAAGAGCCTTTCCAGCAACAATTGTCCATTGTCTCTTCGCTCAGTGGTTGCCTACAACTGCCCAAATCTGGAAGAATTCTCAATCCCAATTTCAAAAAATCAGTCCAATATTCATGTCCATTTGAGGTCAACTGCCTTGAAACAACTACCATCGTCAATTGTGCATCTTCAAGATCTTACAAACTTCTCTTTTCCAATTAGTGATCTTCTCATGGCTCTTCCTGAAAAGTTCACCAATCAAATCATGCTTTCAGACCCTAATAACAAAGAATATGACTCAGTGGCCACCTTACGCAGAATACTACCCAGCCCTATGTTCCATTATCTAAAAGAATTGAAATTTGATGGATGTCAAAGTTTAATTGAACTCCCAGACAACATCTCTTTGTTATCATCATTGTTGGTGATAAGACTCCACAACACTAATATCATGACCTTTCCAGAAAACATTAAGACTCTTCCGAGACTCAAAATTGTTTTACTTTGTCATTGTGAAAGGTTACAATATGTGCCAGCGCTTCCACCTTCCGTTCATCACTTCAAGGCCTGGGACTGCAAATCTTTGAGGACAGTGTCAAGCTCCACAAGTGAACTAAAAAGACAACACGGTACTACTTTTATATTCGTAAACTGCTTGAAATTGGATGAAGAGTCATGCAATACCATTTTGGAAGATGCCATTGTTAGGATGGACACTAGGGCTAAAACACAACAACTCTCACCAAGATTGGAAGAAAATAGAAATGAAGAATGCACTGTTGTTGATGATGATGATGGCTTTCTTAGTGAGGATAACGCCAACGTTGGCAAGGTTTGTTATTTCTTGCCAAGTAGAGGCAGTAAACTTGGTGGCTTGTTCCATCGTGGCTCTTCACAAAATTCCATCAGCATTCAACTGCCACAAGGTTCCAATTTCTTTGGCTTCATATTCTACTTGGTTGTTCCACCAATACAACCATGCAATACTGGTGGTGACCTTGACATTAGGTTTGGGTTTGAATGTTACTTGGAAACAAGTTGGGGTCAAAGGACCCATATAGCAAGTTCGTCCTTAATAGAATGGAGCTGCGAATTTTATTATGGATATCAGATGAATCTTTTGTCGGATCATGTGTTATTATGGTATGATTCACAATGCTGTAAGCAGATAATGGAAATAATCAGAGGAAGAAAGGCCATTGATGATGATGACAAGAATGCAAATCTGGAAGTTAAGTTCTTTGCTCGGCTACCAAACAAGGAAGAAGTGGTGATAAAAGAGTGTGGCATCCGTTGGATATACACAAATATGGAGAAGGAATCAAGAGTGTGCAGGTTCAAGAGAAGCAGGCAAGTTTTCGAGTTAGAAGAAAAGGACTTGGAATCTGATGATGAAGGAGAAGAACTAGTTCCTCCAGCAAAGAAATTTAAGAATAGCTTAATGGAAGTTGAATCAGTAGAAAACTTGAGTTTAAAGAAATATAGCAACTGCACATCATTATTGCTGAAGATGGGTAAACTTGAATGCCAAGAGCTTCCAGTGCCTTCAATAGTTCAAGACTGA 3603 0.3986 MFILLLHLHLHLSRNTRNGFTSHLHYALCRNQIETFIDYRIEKGGEIWEELVQAIRESSVYLIIFSEHYASSKWCLRELAEIIELTNMVEKGHHHIIPVFYRIEPTHVRKQTGSYYSVFAEYDRNLDNRLVRQWRKALFQAANISGFEYNHHHSRTESDLIEGIVQMIIRKLDQKYTSELRSPFIHDQNYASIESVLINSQDVRTIGIWGMGGIGKTTIAAAIFQEFSPKYEGSCFLANVREESSRHGLNYIFNRLLSELLQEHVHITTPKIVSSAIIRRLRRKKVFIVLDDVNTSELLENLLGVGQDYLGLGSKVIVTTRDKHVLLSRSVDHIHEVMEMNEENSLKLFSLNAFNRNHPPENGYWDLSKRALAYARGNPLALKVLGSFLHSKTEKEWDNALTKLKRIPNADIQKVLRLSFNELDDTEKDIFLDIACFFKGEEKEKVIRILNECGFFADIGIRNLLDKALISIATNKSIQMHDLIQEMGHKIVCEESLKNPGKRSRVWHPDEVCDILENDKGSATIETIYLDMTQRTEICISSGAFRKMPKLRLLAFASSSIDYGRKRVDYTLSLPTNLELPNNLRYIQWDRCPLKSLSTTSWPNKLVELSMPYSNVEKLWDGPQSLPSLEEVFLSGSKRMIECPDFSGAPNLKTIWLNQCESLPHVHPSIFSLPKLDYLAVYGCKKLKSLSSNNCPLSLRSVVAYNCPNLEEFSIPISKNQSNIHVHLRSTALKQLPSSIVHLQDLTNFSFPISDLLMALPEKFTNQIMLSDPNNKEYDSVATLRRILPSPMFHYLKELKFDGCQSLIELPDNISLLSSLLVIRLHNTNIMTFPENIKTLPRLKIVLLCHCERLQYVPALPPSVHHFKAWDCKSLRTVSSSTSELKRQHGTTFIFVNCLKLDEESCNTILEDAIVRMDTRAKTQQLSPRLEENRNEECTVVDDDDGFLSEDNANVGKVCYFLPSRGSKLGGLFHRGSSQNSISIQLPQGSNFFGFIFYLVVPPIQPCNTGGDLDIRFGFECYLETSWGQRTHIASSSLIEWSCEFYYGYQMNLLSDHVLLWYDSQCCKQIMEIIRGRKAIDDDDKNANLEVKFFARLPNKEEVVIKECGIRWIYTNMEKESRVCRFKRSRQVFELEEKDLESDDEGEELVPPAKKFKNSLMEVESVENLSLKKYSNCTSLLLKMGKLECQELPVPSIVQD* 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0258 1200 ProSiteProfiles TIR domain profile. 1 172 IPR000157 GO:0007165
Amo16g0258 1200 Gene3D - 170 335 IPR027417 -
Amo16g0258 1200 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 147 IPR035897 -
Amo16g0258 1200 PRINTS Disease resistance protein signature 375 389 - -
Amo16g0258 1200 PRINTS Disease resistance protein signature 624 640 - -
Amo16g0258 1200 PRINTS Disease resistance protein signature 280 294 - -
Amo16g0258 1200 PRINTS Disease resistance protein signature 205 220 - -
Amo16g0258 1200 Pfam Leucine Rich Repeat 605 622 IPR011713 -
Amo16g0258 1200 Gene3D - 339 424 IPR042197 -
Amo16g0258 1200 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 434 IPR027417 -
Amo16g0258 1200 Gene3D - 10 169 IPR035897 -
Amo16g0258 1200 SUPERFAMILY L domain-like 480 881 - -
Amo16g0258 1200 Pfam NB-ARC domain 192 417 IPR002182 GO:0043531
Amo16g0258 1200 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 862 IPR044974 GO:0006952
Amo16g0258 1200 Gene3D Ribonuclease Inhibitor 522 724 IPR032675 -
Amo16g0258 1200 Pfam TIR domain 14 178 IPR000157 GO:0007165
Amo16g0258 1200 SMART AAA_5 202 339 IPR003593 -
Amo16g0258 1200 SMART till_3 5 144 IPR000157 GO:0007165
Amo16g0258 1200 Gene3D Ribonuclease Inhibitor 775 906 IPR032675 -
Amo16g0258 1200 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 862 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0258 Amo-Chr16 3907141 3920524 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0258 20 853 WRKY Transcription Factor Family AT4G12020 31.250 4.21e-94 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0258 - - ahf:112708790 2158.64