Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0242 TTCTTCTTTTTCGCGTTCTTCTCTCTTTTAACTCCAACTTCGTTTTCTATCGATTTTTGTTTACTGAAATCAAAGTTTGGATTCGTTTTGAAGATAATTGTTGATTCAATGTCAGATTCTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGACGCTCGGGTGTAGATCAGAGCTTTCTTTGGGTGTATTTGTTTCGCCTCTCTCTGTTGTTGATGACCAGTTTATTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCTAAGGTTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAAACTAAAATATCTCTGACCGAGAAGACGAATCCGACATCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGTTTATCACCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCATGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTATGGAATATACGAAGTCGAAGAACAAGTTTCCAGCTCAATATTCAACAACCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCATCACGCACTAAGTGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTTGTTCGCAAAATATTTGCGAATTTGCATCCGAATCGGAGGAGCTGACTGCATTTCTGCACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCTGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGGTAAAAGTAATTTTATATTCAGTTAAACCTTTTGATGCTGCATCAGTGGTGCATTCAAATAACATCCAATATCAAGGACATGGTTTTAGTCTCAAAGCATCATGGGGGGATAGATTTCAGGGTGTATATTCAACTTTATTTGGGTTTAAAAAATCGCAGGTTATGGGTGTATATTTGATTTGA 1584 0.4135 FFFFAFFSLLTPTSFSIDFCLLKSKFGFVLKIIVDSMSDSQLNQGEVDYEFESNEVPETLGCRSELSLGVFVSPLSVVDDQFIPKVGMTFTTLEDAGKFYRNYAKVAGFSTRVRSTNRKGNEIKNQLITCSREGKWKTKISLTEKTNPTSGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAAAVYHRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFMEYTKSKNKFPAQYSTTEVKCQCLLFESRGILCHHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFCSQNICEFASESEELTAFLHRAYDNVMAEMESLKAKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEVKVILYSVKPFDAASVVHSNNIQYQGHGFSLKASWGDRFQGVYSTLFGFKKSQVMGVYLI* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0242 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 300 398 IPR031052 GO:0006355
Amo16g0242 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 195 IPR031052 GO:0006355
Amo16g0242 527 Pfam FAR1 DNA-binding domain 98 183 IPR004330 -
Amo16g0242 527 PANTHER OS03G0843700 PROTEIN 71 195 - -
Amo16g0242 527 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 217 289 IPR031052 GO:0006355
Amo16g0242 527 PANTHER OS03G0843700 PROTEIN 300 398 - -
Amo16g0242 527 PANTHER OS03G0843700 PROTEIN 217 289 - -
Amo16g0242 527 MobiDBLite consensus disorder prediction 410 445 - -
Amo16g0242 527 MobiDBLite consensus disorder prediction 418 432 - -
Amo16g0242 527 ProSiteProfiles Zinc finger SWIM-type profile. 294 328 IPR007527 GO:0008270
Amo16g0242 527 SMART 26again6 303 330 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0242 Amo-Chr16 3634736 3638048 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo16g0242 FAR1 8.1e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0242 - - adu:107484182 444.506