LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo16g0240	ATGGAGGCAACAATATTATGTGACAATAATAATAATAAAGGGTTGTTGTTGGAATGTGGTGGTGGTGGTGGAAGGAAGTGCAATAATCCACCACCCTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGACGAAGTCGTATCGTGGAATGCCGACGGCACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCCCGTGATCTCCTCCCTACACTCTTCAAGCATAGCAACTTCTCTAGCTTCGTCCGCCAGCTCAATACCTATGGTTTTCGTAAAGTTGCAACAAGCAGATGGGAATTCTCCAATGAGAAGTTCAAGAAAGGCGAAAGAGAAATGCTATGTGAAATTCGAAGAAGAAGAGCATGGACAAGCAAGCAACGGAATGCAGCACAAAATCAAGGTGCACCCCAAGACTCCGATGAAGATCAAAGGTCTTCATCGACTTCTTCGTCTTCGGGTTACACCACTCTAGTTGATGAGAACAAGCGCCTCAAGAAGGAGAATGGGGTGTTGAGTTTAGAGCTCACAACCATGAAGAGGAAGTGTAGGGAACTGCTTGATTTGGTGGCGAAATACTCGCATGCTCAAGAGGAGGAAGAGGATGAGGACGAGGATGAGAATGAGGCCGAGGCCGGAAGGCCAATGCTGTTTGGAGTAAGATTGGATGTTCAAGGGCAGAGGCAGGTGAAGAGGAAGAGAGACGAGATACGTGAAAGCGCAAGCATTTTGCTCTCTCAATCATGCAAATAG	759	0.4809	MEATILCDNNNNKGLLLECGGGGGRKCNNPPPFLLKTYMLVEDPATDEVVSWNADGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFSNEKFKKGEREMLCEIRRRRAWTSKQRNAAQNQGAPQDSDEDQRSSSTSSSSGYTTLVDENKRLKKENGVLSLELTTMKRKCRELLDLVAKYSHAQEEEEDEDEDENEAEAGRPMLFGVRLDVQGQRQVKRKRDEIRESASILLSQSCK*	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo16g0240	252	MobiDBLite	consensus disorder prediction	127	162	-	-
	Amo16g0240	252	ProSitePatterns	HSF-type DNA-binding domain signature.	72	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	Gene3D	-	25	123	IPR036388	-
	Amo16g0240	252	MobiDBLite	consensus disorder prediction	128	161	-	-
	Amo16g0240	252	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	PRINTS	Heat shock factor (HSF) domain signature	33	56	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	PRINTS	Heat shock factor (HSF) domain signature	84	96	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	SMART	hsfneu3	29	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	Pfam	HSF-type DNA-binding	33	122	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Amo16g0240	252	SUPERFAMILY	"Winged helix" DNA-binding domain	28	122	IPR036390	-
	Amo16g0240	252	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	25	252	IPR027725	-
	Amo16g0240	252	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-3	25	252	-	-
	Amo16g0240	252	MobiDBLite	consensus disorder prediction	197	222	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo16g0240	Amo-Chr16	3599862	3603487	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo16g0240	30	195	HSF	AT2G41690	61.111	3.54e-72	219

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Amo16g0240		HSF_DNA-bind	5.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo16g0240	K09419		-	gmx:100802739	330.487