Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0239 ATGGGAACTGCCTCCAGGCAGTTGAAGGTTATGCTCCGCAAGAACTGGCTCCTCAAAATTCGTCACCCTTTCGTTACTGCAGCTGAGATATTGCTCCCTACGGTTGTGTTGTTGCTGTTAGTGGCTGTGAGGACTCAAGTTGACACACAAATTCATCCAGCTGAACCGCACATTCAGAAAGAGATGTTTGTGGAGGTGGGTAAAGGTATATCCCCTAACTTCGAACAAGTTTTGGCATCCTTGTTGGAGGAAGGGGAGTATTTAGCTTTTGCACCAGATACCGATGAGACGAAGCTGATGATAGATGTAGTGTCCATAAAATTCCCACTCCTGAAGCTTGTTAGTCGAGTGTACAAAGATGAGGTAGAGTTGGAAAGCTACATTCGCTCAGATGCTTATGGTACCTGCAGTCAAGCAAGGAATTGTTCAAATCCGAAAATTAAAGGAGCTGTTGTATTTTATGAACAAGGTCCTCAGTCGTTTGATTATAGCATACGCCTCAATCATACATGGGCATTCTCCGGTTTCCCAGATGTAAAAACAATAATGGACACAAATGGCCCATTTCTTAACGACTTGGAATTGGGTGTTAGTGCTGTACCAACAATGCAGTACAGCTTCAGTGGGTTTTTTACTCTCCAGCAAATGGTCGATTCATTTATAATATTCATTGCTCAACAGTCTGGCATAAATTCCAGCACTGAACGCATAACCCTTCCTCTATCAGGCTTCTATTACACTGATTTCTCTCTGAATGCTACATGGAATCAGTTTAACCCCAGTCATATACGAGTATCTCCATTTCCCACTCGAGAGTACACTGATGATCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTATACCTATTGGGTTTTCTCTATCCAGTTTCGCGCCTCATCAGTTATTCTGTTTTTGAGAAGGAACAGAAGATTAAAGAAGGACTCTATATGATGGGCCTGAAAGATGGGATATTTCATCTCTCTTGGTTTATCACATATGCTTTGCAGTTTGCAGTGTCTTCCGGGATCATTACTGCTTGCACCATGGATAATTTATTCAAGTATAGTGATAAGACATTGGTGTTTGCCTACTTTTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACATTTTTCAAACGGGCCAAAACAGCTGTTGCAGTTGGAACGCTGTCTTTTCTTGGTGCTTTTTTCCCTTATTACACTGTCAATGATGAGGGTGTTTCAATGGTATTGAAGGTTCTTGCTTCTATACTTTCACCTACAGCCTTTGCTCTCGGGTCAGTTAACTTTGCTGATTATGAGCGTGCTCATGTGGGACTGCGTTGGACCAACATATGGCGGGAATCATCTGGAGTGAATTTTTCCCTATGTCTTTTGATGATGATACTTGATACACTGCTATATTGTGCAATGGGTCTATATTTTGACAAGGTTCTTCCACGGGAGTATGGACGGCGATATCCGTGGTCTTTTGTTTTCCGAAGAGACTTCTGGAGAAAGAATAAAACTGGAAAACACTGCCCCTCCAATTTTGAAGTTAAAGTTGATGGTAGGAATTCCGAGTCAAGACCTTCTATAGAAGCAATAAGCCTAGATATGAAACAACAGGAGCTTGATGGCAGATGCATTCAGATAAGGAATTTGCATAAAGTGTATGCTACTAGAAAAGGAGATTGCTGTGCTGTTAACTCCTTACAACTTACATTGTATGAACATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGTAAAAGTACAACAATCTCGATGCTTGTTGGTCTTCTTCCTCCTACATCAGGGGATGCTTTGGTGTTTGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATACTCTTTCCCGAATTGACCGTAAGGGAGCATTTAGAAATATTCGCCATATTAAAGGGTGTTGATGAAGACTCACTGGAGGCTGCTGTTACCAATATGGCTGACGAGGTGGGCCTGGCTGATAAAATTAACAGTGTTGTGAGAGCTCTTTCTGGTGGCATGAAGAGAAAATTGTCTCTTGGAATTGCATTGATAGGGAACAGTAAGGTTATAATTCTTGATGAACCTACCAGCGGAATGGATCCATACTCAATGCGTTTGACTTGGCAGTTAATAAAAAAATTTAAGAAGGGCAGGATAATCTTACTAACAACTCATTCAATGGATGAAGCAGATGAACTAGGTGATCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGCTCACTTTTCTTGAAGCATCATTATGGAGTTGGTTATACTCTAACTCTTGTAAAGTCAGCTCCTACTGCTTCTATAGCTAGTGATATAGTATATCGTCATGTTCCCTCAGCAACCTGTGTAAGCGAGGTGGGAACTGAGATTTCCTTTAGGCTTCCGCTGGCATCTTCATCAGCTTTTGAGGGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCACTTTTGAACATGGAAATAAGTGGTAGTGGTAATGAAGACAGTCTTGGTATTGAAAGCTATGGTATATCAGTCACAACCCTAGAGGAGGTATTTTTGAGAGTTGCAGGATGTGACTATGATGGAGTCGAATGCTTCGAGGGAAATGATCGTTCCCTTGTGTCTGACTCTGTGGCTTTGCTTGGTTCTTATGACCATCCCTCCACCAAAAAATGTTTTTTAGGAAATTATAAGAAGTTCCTTGGTTTGATATCTAGCATAGTGGCAGGAGCTTGTGGTTTGATTTTTGCTATGGTTATAAGTTTCATAAACTTCGTGGGTATGCTGTGTTGTAGCTGTTGTCTCATTTCTAGGTCAACATTCTGGCAACACTCGAGAGCTTTATTCATTAAAAGGGCAATATCTGCTCGGAGAGATCACAAAACAATTATATTCCAGCTAATTATTCCTGCTGTTTTCTTGTTTATTGGTCTTCTTTTTCTCAAGCTCAAGCCACATCCTGATCAGCAGGGCCTGATCCTTTCAACTTCTTATTTTAATCCTCTGTTGACTGGTGGGGGTGGGGGAGGTCCAATCCCTTTTAATCTATCTTTGCCTATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAAAGATACAAGCCAAGCTCATACAAGTTCCCTAATTCAGGGAAGGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACTCTAGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTCAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAATAGTGATGGGAGCTTAGGCTACACTGTATTGCACAATTGTTCTTGCCAGCACGCTGCTCCCACCTTTATCAATGTTATGAACAGTGCCATTCTTAGACTTGCTACTGGTGACACAAATATGACAATTCAGACACGCAACCACCCACTACCAATGACACAAAGCCAGCTCGTACAACGTCATGACCTGGATGCCTTCTCTGCTGCAATTATTGTCAATATTGCATTCTCTTTCATACCCGCCTCATTTGCTGTTCCCATTGTTAAGGAACGTGAAGTGAAAGCTAAGCACCAGCAGCTAATTAGTGGGGTTTCTGTCCTTTCATATTGGGCTTCTACATATATTTGGGACTTCGTGAGCTTCTTGTTTCCGGCCTCATTTGCCATAATTCTCTTTTACATTTTTGGTTTGGATCAATTTGTTGGAGGGGTATCTTTGTTACCGACTACACTGATGCTTTTGGAATATGGACTTGCAGTTGCATCATCAACTTACTGCCTTACATTTTTCTTTTTTGACCATACCATGGCTCAGAATGTGGTTCTTTTAATTCACTTTTTCACTGGATTGATTCTAATGGTTATCTCATTCATTATGGGACTTATACCAAACACAACAACTGCCAATACTTTTCTTAAGAATTTTTTCAGAATTTCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTGGCACTTCTACGGCAAGGAATGAAAGATAAAACAAGTGATGGGATATTTGACTGGAATGTTTCAGGTGCCTCTATTTGTTATCTTGCTGTTGAGAGCATTGGTTACTTTTGTTTGACACTTGCACTTGAAGTTTGTCCCTCCCTCAAATTAACTCCGTTTATGATCAAGAAGTGGTGGCAGAGTTTAAACATCTTCCAGCGTAATACCACTTATCTGGAACCTCTCTTAGAACCTTCTATGGAATCTGTTTCAATGGACTTTGATGAAGATGTGGATGTGAAAACCGAAAGAAATAGAGTACTTTCTGGTTCCCTCGATAATTCTATTATCTACCTGCGTAATCTTCGAAAGGTGTATTCTGAAGGGAAGTATCTAGGGGAAAAGGTTGCAGTAGATTCGTTAACCTTTTCGGTTCAGGAAGGAGAATGTTTCGGCTTTTTAGGAACAAATGGAGCTGGAAAGACCACAACTCTTTCTATGTTATGCGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCTCGCCAATATATTGGATATTGTCCGCAATTTGATGCTTTATTGGAGTTTTTGACCGTTCAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGAATACACTATAGATAATATTGTTAAGGAAAAGATGGTGGAATTTGGCTTATTGAAGCATGCTAATAAACCGTCATTTACTCTTAGTGGGGGGAATAAAAGGAAACTATCTGTTGCAATCGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAACCATCTACAGGTATGGATCCCATCGCCAAAAGATTTATGTGGGATGTAATATCTAGGATCTCAACAAGAAGGGGGAAAACTGCAGTAATTCTAACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGGATGGGAATAATGGTTGGTGGACGATTAAGATGCATCGGAAGTCCTCAGCATTTAAAAACGAGATTTGGGAATCATCTGGAACTAGAGGTAAAACCTACTGAAGTGAGTTCTGCAGACTTGCAAACACTATGCCAAGCTATTCAGGAAAGAGTTCTCTATGTCCCTTCTCATCCTAGAAGCTTGCTTGGCGACCTTGAAGTTTGCATTGGTGCCACTGACTCCATTACTGCAGAAAATAGTTCCATTGCAGAGATTAGCTTGACACGAGAAATGATAAGCTTAATTGGGCGCTGGCTTGGCAATGAAGAAAGAGTCAAGACACTAATCTCCTGTACACCTGTCTCTGATGGAGCTTCTAGGGAACAATTATCTGAACAATTGTTTCGAGATGGTGGTATTCCATTACCAGTATTTTCCGAGTGGTGGTTGTCGAAACAAAAATTCTCAGAAATTGATTCATTTATACTTTCATCATTTCGGGGAGCAAGATGGCAAGGGTGCAATGGTTTGAACATCAGATACCAGATACCCTATGAAGAAGGTTTGTCTCTGGCTGATGTCTTTGGTCACCTTGAAGGAAACAGAGATAGATTAGGGATTGCTGAGTACAGCATCAGCCAGTCAACTCTGGAGACAATATTTAATCATTTTGCAGCTACTTCATGA 5640 0.4085 MGTASRQLKVMLRKNWLLKIRHPFVTAAEILLPTVVLLLLVAVRTQVDTQIHPAEPHIQKEMFVEVGKGISPNFEQVLASLLEEGEYLAFAPDTDETKLMIDVVSIKFPLLKLVSRVYKDEVELESYIRSDAYGTCSQARNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVKTIMDTNGPFLNDLELGVSAVPTMQYSFSGFFTLQQMVDSFIIFIAQQSGINSSTERITLPLSGFYYTDFSLNATWNQFNPSHIRVSPFPTREYTDDQFQSIIKKVMGILYLLGFLYPVSRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAVSSGIITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMVLKVLASILSPTAFALGSVNFADYERAHVGLRWTNIWRESSGVNFSLCLLMMILDTLLYCAMGLYFDKVLPREYGRRYPWSFVFRRDFWRKNKTGKHCPSNFEVKVDGRNSESRPSIEAISLDMKQQELDGRCIQIRNLHKVYATRKGDCCAVNSLQLTLYEHQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLEIFAILKGVDEDSLEAAVTNMADEVGLADKINSVVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKFKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASIASDIVYRHVPSATCVSEVGTEISFRLPLASSSAFEGMFREIEGCMKKPLLNMEISGSGNEDSLGIESYGISVTTLEEVFLRVAGCDYDGVECFEGNDRSLVSDSVALLGSYDHPSTKKCFLGNYKKFLGLISSIVAGACGLIFAMVISFINFVGMLCCSCCLISRSTFWQHSRALFIKRAISARRDHKTIIFQLIIPAVFLFIGLLFLKLKPHPDQQGLILSTSYFNPLLTGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRYKPSSYKFPNSGKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNSDGSLGYTVLHNCSCQHAAPTFINVMNSAILRLATGDTNMTIQTRNHPLPMTQSQLVQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKEREVKAKHQQLISGVSVLSYWASTYIWDFVSFLFPASFAIILFYIFGLDQFVGGVSLLPTTLMLLEYGLAVASSTYCLTFFFFDHTMAQNVVLLIHFFTGLILMVISFIMGLIPNTTTANTFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGIFDWNVSGASICYLAVESIGYFCLTLALEVCPSLKLTPFMIKKWWQSLNIFQRNTTYLEPLLEPSMESVSMDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYLGEKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARQYIGYCPQFDALLEFLTVQEHLELYARIKGVPEYTIDNIVKEKMVEFGLLKHANKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRMGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSADLQTLCQAIQERVLYVPSHPRSLLGDLEVCIGATDSITAENSSIAEISLTREMISLIGRWLGNEERVKTLISCTPVSDGASREQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARWQGCNGLNIRYQIPYEEGLSLADVFGHLEGNRDRLGIAEYSISQSTLETIFNHFAATS* 1880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0239 1879 CDD ABC_subfamily_A 550 771 - -
Amo16g0239 1879 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1451 1689 IPR003439 GO:0005524
Amo16g0239 1879 Pfam ABC-2 family transporter protein 979 1381 - -
Amo16g0239 1879 Pfam ABC-2 family transporter protein 230 480 - -
Amo16g0239 1879 CDD ABC_subfamily_A 1451 1677 - -
Amo16g0239 1879 Pfam ABC transporter 570 713 IPR003439 GO:0005524
Amo16g0239 1879 Pfam ABC transporter 1473 1615 IPR003439 GO:0005524
Amo16g0239 1879 SMART AAA_5 578 760 IPR003593 -
Amo16g0239 1879 SMART AAA_5 1481 1668 IPR003593 -
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1303 1646 - -
Amo16g0239 1879 ProSitePatterns ABC transporters family signature. 685 699 IPR017871 GO:0005524
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 6 1305 - -
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1640 1876 - -
Amo16g0239 1879 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 550 783 IPR003439 GO:0005524
Amo16g0239 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1447 1683 IPR027417 -
Amo16g0239 1879 ProSitePatterns ABC transporters family signature. 1588 1602 IPR017871 GO:0005524
Amo16g0239 1879 Gene3D - 1443 1694 IPR027417 -
Amo16g0239 1879 Gene3D - 537 786 IPR027417 -
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1303 1646 IPR026082 GO:0016021|GO:0055085|GO:0140359
Amo16g0239 1879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 788 IPR027417 -
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 1305 IPR026082 GO:0016021|GO:0055085|GO:0140359
Amo16g0239 1879 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1640 1876 IPR026082 GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0239 Amo-Chr16 3577602 3599689 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0239 525 794 Calmodulin-binding Proteins AT2G36910 25.532 5.61e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0239 K05643 - gmx:100803263 3290.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0239 16 3577602 3599689 Amo16g0239 16 3577602 3599689 ECH