Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0238 ATGCCAGTTTACTTGGGAGCTTATGATGATGAGGAGGCAGCAGCTAGAGCATATGATCTTGCTGCTTTGAAATACTGGGGTCCAGGAACGCTTATTAACTTCCCAGTGACTGATTATACAAGAGATCTTGATGAAATGCAAAATGTTTCCAGGGAGGAATACCTTGCGTCTTTGCGTCGGAAGAGCAGTGGTTTTTCAAGAGGAATATCAAAATACCGTGCCCTCTCCAGTCGATGGGAGCCGTATGGTCGTATAGCAGGATCAGATTACTTCAATAGCATGCAGTATGGTGATGATTCAGCAGCAGAAAGTGACTACATGAGTGGTTTTTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGCATCTAACAAAAATCGACAACCTGATAGTGGGACAAGATTATCAGAAGAAAAGAAACACGGATTTGCTGGAGATGTTTGTAGTGAACTTAAGACACTGGAGCAGAAAGTGCAACCTACTGAGCCATACCAAATGCCAAAGTTAGGTCAGCCTCACAATGAGAAAAAACATAAAAGTTCTTCAGGATCTGCCTTAAGTATTTTGTCACAGTCAGCTGCTTACAAGAGTTTGCAAGAGAAAGCAGCAAAGAGACAGGAGAATAGTACAGAAAATGATGAGAATGAAAACAAGAATATAGTCAATAAGTTGGATCATGGCAAAGCAGTTGAGAAATCATCAAATCATGAGGATGGAAATGACCGACTTGACATTGCAATGGGAATGAGCGGAGCTTTGTCACTTCAAAGAAACGTTTACCCGTTGACTCCATTCTTGTCTGCCCCACTCTTGACGGCCTACAACTCTGTGGATCCATTGGGAGATCCCGTTCTGTGGACATCTATTGTTCCCATACTTCCAGCTGGCATGATTTCTCGCACAGCTGAGGTTACCAAGACTGAGACTAGTTCAACATACACTATGTTTCAGCCAGAGGAATGA 975 0.4236 MPVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLDEMQNVSREEYLASLRRKSSGFSRGISKYRALSSRWEPYGRIAGSDYFNSMQYGDDSAAESDYMSGFCIERKIDLTSHIKWWASNKNRQPDSGTRLSEEKKHGFAGDVCSELKTLEQKVQPTEPYQMPKLGQPHNEKKHKSSSGSALSILSQSAAYKSLQEKAAKRQENSTENDENENKNIVNKLDHGKAVEKSSNHEDGNDRLDIAMGMSGALSLQRNVYPLTPFLSAPLLTAYNSVDPLGDPVLWTSIVPILPAGMISRTAEVTKTETSSTYTMFQPEE* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0238 324 ProSiteProfiles AP2/ERF domain profile. 1 35 IPR001471 GO:0003700|GO:0006355
Amo16g0238 324 Gene3D AP2/ERF domain 2 37 IPR036955 GO:0003700|GO:0006355
Amo16g0238 324 MobiDBLite consensus disorder prediction 161 189 - -
Amo16g0238 324 MobiDBLite consensus disorder prediction 204 246 - -
Amo16g0238 324 SUPERFAMILY DNA-binding domain 3 36 IPR016177 GO:0003677
Amo16g0238 324 SMART rav1_2 2 41 IPR001471 GO:0003700|GO:0006355
Amo16g0238 324 MobiDBLite consensus disorder prediction 201 246 - -
Amo16g0238 324 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 323 - -
Amo16g0238 324 PANTHER BNAA03G19580D PROTEIN 3 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0238 Amo-Chr16 3562945 3565110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0238 3 322 AP2-EREBP Transcription Factor Family AT2G41710 57.612 1.40e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0238 K09285 - gmx:100814117 532.717