Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0228 ATGGCTGAATCATTCATCTTCAGCATCGCTGAATCACTCATAACTAAGCTTGCTTCTCGTGCATACCAAGAAGCATCTCGAGTGGTTGGTGTCTACGATGACCTCCAAGACTTGAAAACCAGTCTCTCATATGTGAAAGCTGTGTTGTTGGATGCAGAGCAGAAGCAAGAGCAGAACCATGAGCTGCGAGAGTGGCTGAAGCAGATCAAGCTCGTCTTCTATGATGCTGAGAACTTGCTTGATGAAGTTGACTGCGAATCACTGCGCAAGCAACTGCGAATCACTCAAAAGGACAAGGTAGGTGGCTTCTTCTCGAGTTCTAATCCACTTTTGTTTCGCTATAAGATTTCTCAACAGATCAAAGAGATTAGGAAGAGATTAGACAGAGTCGCGGCCGATAGGGATAAGTTTGGGCTTCAAACAATTGCAGTTGATAGGCGAGTTGGGCATAAGAGGGAGATGACTTACTCCCATGTTGTTGAGTCTGATGTCATAGGAAGGGATCATGATAAAGAAAAGATTGTAAAGCTCTTGATGGAACCGAGTCTTGACAACAATGCTGGCTCTAAACATATCTCTGTGATTCCCATTGTGGGAATTGGAGGTTTGGGAAAGACCACTCTTACTAAGCTTGTCTTCAATGATAAAAGGATAAATGAGTCCTTTCCATTGAAGATGTGGGTGAGTGTTCATGATGATTTTAATGTTAGATCATTGATTATCAAAATCATCAATTCTCCTCGTGACTTTGCTGCTTCTACTGATGCTCCTGCGGGCCAACAAAACTTAAGAGACTTGGAGATTGAGCAATTGCAATATCGTCTAAGAAACATGCTTGAGGGTAAAAAGTTCCTGCTGGTCTTGGATGACGTATGGAATGAAGATCGTGTTAAATGGGTTGAGCTGCAACATCTCATTTCAGTGGGTGCTCAAGGAAACAAAGTTATAGTCACAACACGTAGCCAGTCCATAGCTTCGATCATGGGTACCGTTGCCTACTCGCACCATTTAAAGGGTCTTTCTCCCAAGGATTCATTGCGTTTGTTTGTTAGATGGGCTTTTAAAGGAGACGAGGGAAAGTATCCGGATTTAGTCATGATTGGAAGAGAAATCGTGGAAAAGTGCAAAGGAGTTCCTTTAGCGGTGAGAACGTTGGGAAGTTCACTATTTTCCAAACACGAGATACAAGAGTGGGAATCACTGAGAGACAAGGAGATTTGGAATTTGCCACAAAAAGAGGATGACATCTTACCTGCGTTAAAATTAAGCTATGATGAAATGCCATCCCATTTGAGGCAATGTTTTGCTTTGCTCTCCCTTTATCCAAGGAATTTTCGATTTGATTCTTTTGGCGTTGCTTCACTTTGGGGGGCAGCAGGTTTGCTTCCATTGCAAAGCAAAGATAAAACAATGGTAGACGTTGCACACCAATATTTGAGAGACTTAATGGCAAGATCTTTTCTTCATGACGTTATTGATTGTGGCACCTTTTATTTTTTTGGAATACATGATTTAGTGCATGATCTAGCAGTATATGTTGCAAAAGATGTGTGTCAATTGGTTAATTCAAACACTCAGGACATATCAGAAAATGTCCTGCATTTGTCTTTTGTTGAGAATGGTTTGCCTTACAATTCCGTCAAGCCAAGCTTACGAGGTACGAGAAGCATTCTGTTTCCAGTTGACGAAGTGGGAGCCAGTGAAGCTTTCTTGAATGCATGGGTGTTAAACTGCACTTACCTGCGATATTTGAATTTAAGTGATTCTACATTTGAGACTTTGCCTGAGTCAATTGGTAAGTTGAAACATTTAAGATATATTTCTCTTTGTAATAATACAAGAATAAAGAGGCTCCCTAATTCTATTTGCCAGCTCCAAAATTTGCAAGTTCTGCTTCTTGGTAGGTGTTCAAATCTTGAATTTTTACCGAAAAAGTTAAGAAAGTTGATCAGCCTGCAAAGATTGGGGATAACCACAAAGCAATCTATTTTGCCAGAGAGTGACATTGCAAAGTTGAATTGTCTTGAATATTTACGTGTCGAAGATTGTGATAATTTGGAGTCCTTGTTTGCTGAGACAAGATTGCCTACACTTCTAACTTTGCAAGTTATTGGCTGTGCAAATCTAAAGTCTTTACCACTTGACACTCACCATTTCCCTCAGTTAGAAACTATGCTAATCGAAGGTGTTGGCAATGAAGATTGGCTTCATAGATCAGAGAATACTAATTCTGTCTTGAGGTTAAAAACCATTTCTCTTTATAATATGGTAACATTGCCTCATTCTCTCCAACAATATGCAAGCACGTTACAAACTTTGATGATTGGAGATTGCTACGAGCTGGAGGTACTACCTGAATGGCAGTTGAATCTGAGTGCTTTGAAATTTCTTTATATCTGGGATTGTCCGGAATTGAAGTCTCTTCCCAGTGATATCCACCGTCTAACAAGTCTCCAAGTTTTGCAAATCATAAATTGCACCGAGTTATATAGAAAATACAAGCCACAAGTTGGAGAGTGCTGGCCCATGATATCTCACATCAAACATACTGAAATTAGGAAGACATGGGACTAG 2574 0.4029 MAESFIFSIAESLITKLASRAYQEASRVVGVYDDLQDLKTSLSYVKAVLLDAEQKQEQNHELREWLKQIKLVFYDAENLLDEVDCESLRKQLRITQKDKVGGFFSSSNPLLFRYKISQQIKEIRKRLDRVAADRDKFGLQTIAVDRRVGHKREMTYSHVVESDVIGRDHDKEKIVKLLMEPSLDNNAGSKHISVIPIVGIGGLGKTTLTKLVFNDKRINESFPLKMWVSVHDDFNVRSLIIKIINSPRDFAASTDAPAGQQNLRDLEIEQLQYRLRNMLEGKKFLLVLDDVWNEDRVKWVELQHLISVGAQGNKVIVTTRSQSIASIMGTVAYSHHLKGLSPKDSLRLFVRWAFKGDEGKYPDLVMIGREIVEKCKGVPLAVRTLGSSLFSKHEIQEWESLRDKEIWNLPQKEDDILPALKLSYDEMPSHLRQCFALLSLYPRNFRFDSFGVASLWGAAGLLPLQSKDKTMVDVAHQYLRDLMARSFLHDVIDCGTFYFFGIHDLVHDLAVYVAKDVCQLVNSNTQDISENVLHLSFVENGLPYNSVKPSLRGTRSILFPVDEVGASEAFLNAWVLNCTYLRYLNLSDSTFETLPESIGKLKHLRYISLCNNTRIKRLPNSICQLQNLQVLLLGRCSNLEFLPKKLRKLISLQRLGITTKQSILPESDIAKLNCLEYLRVEDCDNLESLFAETRLPTLLTLQVIGCANLKSLPLDTHHFPQLETMLIEGVGNEDWLHRSENTNSVLRLKTISLYNMVTLPHSLQQYASTLQTLMIGDCYELEVLPEWQLNLSALKFLYIWDCPELKSLPSDIHRLTSLQVLQIINCTELYRKYKPQVGECWPMISHIKHTEIRKTWD* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0228 857 Pfam Leucine rich repeat 580 636 IPR001611 GO:0005515
Amo16g0228 857 SUPERFAMILY L domain-like 502 826 - -
Amo16g0228 857 Gene3D - 10 121 - -
Amo16g0228 857 Gene3D Ribonuclease Inhibitor 740 838 IPR032675 -
Amo16g0228 857 CDD RX-CC_like 2 131 IPR038005 -
Amo16g0228 857 Gene3D - 339 422 IPR042197 -
Amo16g0228 857 PANTHER OS08G0543100 PROTEIN 27 829 - -
Amo16g0228 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 438 IPR027417 -
Amo16g0228 857 Pfam Rx N-terminal domain 11 97 IPR041118 -
Amo16g0228 857 Gene3D Ribonuclease Inhibitor 515 729 IPR032675 -
Amo16g0228 857 PANTHER DISEASE RESISTANCE PROTEIN RP 27 829 IPR044974 GO:0006952
Amo16g0228 857 Gene3D - 423 512 IPR036388 -
Amo16g0228 857 Gene3D - 149 332 IPR027417 -
Amo16g0228 857 Pfam NB-ARC domain 170 425 IPR002182 GO:0043531
Amo16g0228 857 PRINTS Disease resistance protein signature 194 209 - -
Amo16g0228 857 PRINTS Disease resistance protein signature 278 292 - -
Amo16g0228 857 PRINTS Disease resistance protein signature 375 389 - -
Amo16g0228 857 PRINTS Disease resistance protein signature 623 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0228 Amo-Chr16 3420217 3422991 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0228 192 829 WRKY Transcription Factor Family AT5G45050 22.026 3.34e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0228 - - gmx:100786131 935.25