Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0211 ATGGTTTCAACTTGTGGCATCTCTTTCCAAATCTCCACATTAAAGAAAAAGGGAAGGTACATTGTGAAGGAAAGTTGCAATTTTTGTTGTTGTTGTTGTGGCAGAGCATTGATCACAGTTTTGGGGTTTATTTTTGGAAGAACGCTGTTGAGAGTGTGGGGGGTGAAAGCTCTAAAAGCACTTCACTTCAGCAGAGAACAGTGTTCGGTGATGGAAATTCTGTGCTTCTTGCATCTTCTGCTAGGTTGGTATCTCTCAAACTCTAACCTTGTTAATGCTCAGCTACAAGACCAAGCTATATTACTTGCCATCAACAAAGAGCTTGGAGTTCCTGGCTGGGATTCCAACAACTCAAACTACTGTAATTGGCAAGGAATAAGCTGTGGTAATCATTCATTGGTGGAGAAGCTTGATCTTGCTCACCGGAACCTTCGAGGTAATGTTACTTTGATGTCTGAGCTCAAAGCATTGAAGTGGCTTGACTTGTCAAATAATAACTTTGATGGATTGATTCCTCCTGCTTTTGGAAAGTTATCTGATCTTGAAGTCCTAGATTTGTCTTCAAATAAGTTTTCAGGCTCAATTCCGCCGCAATTGGGTGCTCTCAAAAGCCTCAGATCATTGAACCTTTCTAGTAATGTGCTTGTTGGAGAGATACCAATAGAGCTTCATGGCTTAGAGAATTTGCAGGATCTTCAAATTTCTAGTAATCATTTGAGTGGTTTAATACCTTCTTGGGTGGGCAATTTGACCAACCTGAGGGTTTTTTCTGCTTATGAGAATCGTTTAGGTGGCAAGGTTCCGGATAATTTAGGCTCGATTCCGGATCTTCAAATACTTAACCTGCACTCAAATCAGCTTGAAGGCCCTATACCGGCAAGCATTTTTGTCCCAGGGAAGCTACAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGTGATCTTCCTCAGGAAATTGGGAATTGCCATGCCCTTTCCAGTGTTCGAATCGGAAACAACCATCTAGTAGGTAATATTCCAAAGACAGTTGGAAATCTTAGTAGCCTAACCTACTTTGAGGCCGACAATAATAATCTTTCCGGTGAAGTAGTGTCTGAATTTGCTCAGTGTTTGAATCTTACCCTCTTGAATTTAGCTTCAAATGGATTTATGGGAGCAATTCCGGCAGAATTTGGAAAACTTATGAACCTTCAGGAATTAATTCTTTCTGGAAATAGCCTGTTTGGAGATATCCCAAGGTCGATTCTGAGTTGCAAAAGTCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATTCCAAGTGAAATCTGCAACATTTCTAGGTTGCAGTACTTGCTCTTGGGTCAGAATTCCATAAGAGGAGAGATCCCTCATGAAATTGGAAATTGTGCGAAACTTCTTGAACTACAATTGGGCAGCAACTATTTGACTGGAACTATCCCTCCTGAAGTTGGCCACATTAGAAACTTACAGATAGCACTAAATCTGAGCTTCAATCATCTTCATGGACCACTGCCCCCTGAATTAGGAAGACTGGACAAACTTGTTTCCCTCGATGTCTCAAACAACCGGCTCTCGGGTAATATACCACCTGAGCTTAAGGGAATGTTGAGCTTGATTGAGGTCAACTTCTCCAACAATCTTTTTGGAGGCCCTGTACCAGAATTTGTACCATTTCAGAAGAGTCCTATTTCAAGTTTCATCGGCAATAAAGGGCTTTGCGGAGAGCCACTGAACTCTTCATGCGGAGATCTTTACGATGATCACAAGGCCTACCATCACAGGGTTTCTTACAGAATCATACTGGCTGTAATTGGTTCTGGTTTAGCAGTTTTTATGTCGGTAACTATAGTTGTGTTGCTTTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGCCGGGATCATAGACGATGGAACCACTGAAAAACCAACTATAATAGCTGGGAGCATTTTTGTTGATCATCTCAAACAAGCAGTAGACCTTGATGCTGTTGTTAAAGCGACTCTGAAAGACTCTAATAAGCTCAGTAGTGGAACTTTCAGCACTGTTTACAAGGCCGTCATGCCTTCTGGAGTGGTCTTATCCGTAAGGAGACTGAAGTCCGTCGACAAGACAATAATGAACCACCAGAACAAGATGATTAGAGAACTCGAAAGGCTGAGCAAAGTTTGTCATGATAATCTAGTGCGACCGGTTGGCTATGTTATATATGAAGATGTTGCTCTTCTCTTGCATAATTATTTTCCAAATGGTACATTGGCTCAGCTTCTTCATGAATCTTCGAGGCAACCAGAATATCAGCCTGATTGGCCTTCTAGGCTATCCATTGCCATTGGAGTCGCAGAAGGTTTGGCTTTTCTTCATCATGTAGCAATTATCCATCTTGACATTTCTTCTGGCAATGTACTTCTAGATGCAAATTTCAAGCCATTGGTTGGTGAGATTGAGATTTCTAAACTCCTTGATCCAACCAAGGGCACGGCCAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATACCACCAGAATATGCTTATACAATGCAAGTTACAGCACCGGGAAATGTTTATAGCTATGGCGTTGTTCTGTTGGAAATCCTTACTACTCGACTGCCAGTGGATGAGGATTTCGGTGAAGGCGTAGATTTGGTGAAGTGGGTTCAAAGTGCTCCGGTAAGAGGGGAAACTCCAGAGCAGATACTGGATGCAAGGCTCAGCACTGTTTCCTTTGGTTGGAGGAAAGAAATGCTTGCTGCTCTTAAGGTTGCGTTGCTCTGCACGGACACCACTCCGGCAAAGCGACCAAAAATGAAGAATGTGGTTGAAATGCTCCGAGAGATAAAGCAAAACTGA 2874 0.421 MVSTCGISFQISTLKKKGRYIVKESCNFCCCCCGRALITVLGFIFGRTLLRVWGVKALKALHFSREQCSVMEILCFLHLLLGWYLSNSNLVNAQLQDQAILLAINKELGVPGWDSNNSNYCNWQGISCGNHSLVEKLDLAHRNLRGNVTLMSELKALKWLDLSNNNFDGLIPPAFGKLSDLEVLDLSSNKFSGSIPPQLGALKSLRSLNLSSNVLVGEIPIELHGLENLQDLQISSNHLSGLIPSWVGNLTNLRVFSAYENRLGGKVPDNLGSIPDLQILNLHSNQLEGPIPASIFVPGKLQVLVLTQNNFSGDLPQEIGNCHALSSVRIGNNHLVGNIPKTVGNLSSLTYFEADNNNLSGEVVSEFAQCLNLTLLNLASNGFMGAIPAEFGKLMNLQELILSGNSLFGDIPRSILSCKSLNKLDISNNRFNGTIPSEICNISRLQYLLLGQNSIRGEIPHEIGNCAKLLELQLGSNYLTGTIPPEVGHIRNLQIALNLSFNHLHGPLPPELGRLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLFGGPVPEFVPFQKSPISSFIGNKGLCGEPLNSSCGDLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAAGIIDDGTTEKPTIIAGSIFVDHLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAVMPSGVVLSVRRLKSVDKTIMNHQNKMIRELERLSKVCHDNLVRPVGYVIYEDVALLLHNYFPNGTLAQLLHESSRQPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVQSAPVRGETPEQILDARLSTVSFGWRKEMLAALKVALLCTDTTPAKRPKMKNVVEMLREIKQN* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0211 957 Gene3D Ribonuclease Inhibitor 244 297 IPR032675 -
Amo16g0211 957 SUPERFAMILY Protein kinase-like (PK-like) 676 954 IPR011009 -
Amo16g0211 957 Pfam Leucine rich repeat 228 287 IPR001611 GO:0005515
Amo16g0211 957 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Amo16g0211 957 SUPERFAMILY L domain-like 268 581 - -
Amo16g0211 957 ProSitePatterns Tyrosine protein kinases specific active-site signature. 799 811 IPR008266 GO:0004672|GO:0006468
Amo16g0211 957 Gene3D Ribonuclease Inhibitor 94 243 IPR032675 -
Amo16g0211 957 Pfam Leucine rich repeat N-terminal domain 101 128 IPR013210 -
Amo16g0211 957 Pfam Leucine Rich Repeat 396 418 IPR001611 GO:0005515
Amo16g0211 957 Pfam Protein tyrosine and serine/threonine kinase 679 951 IPR001245 GO:0004672|GO:0006468
Amo16g0211 957 SUPERFAMILY L domain-like 111 362 - -
Amo16g0211 957 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 71 955 - -
Amo16g0211 957 Gene3D Ribonuclease Inhibitor 298 587 IPR032675 -
Amo16g0211 957 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 71 955 - -
Amo16g0211 957 Gene3D Phosphorylase Kinase; domain 1 646 754 - -
Amo16g0211 957 Gene3D Transferase(Phosphotransferase) domain 1 755 957 - -
Amo16g0211 957 ProSiteProfiles Protein kinase domain profile. 676 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0211 957 CDD STKc_IRAK 682 954 - -
Amo16g0211 957 SMART LRR_typ_2 154 177 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 274 298 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 394 418 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 226 249 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 178 202 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 442 466 IPR003591 -
Amo16g0211 957 SMART LRR_typ_2 515 538 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0211 Amo-Chr16 3110103 3113697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0211 71 956 Receptor kinase-like Gene Family AT2G41820 71.171 0.0 1289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo16g0211 PK_Tyr_Ser-Thr 8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0211 - - adu:107492611 1887.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0211 16 3110103 3113697 Amo16g0211 16 3110103 3113697 ECH