Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0209 ATGGGGACTCCGGAATTCCCTAATCTAGGCAAGCATTGCTCCGTTTCCGATTGCAAGCTCATCGATTTCTTGCCCTTCACTTGCGATCGCTGCAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAACATAATTGTACAAAGCCCAACAAACATGATGTCACTGTTGTTATATGTCCTCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAATATAACTTGGGAGAATCATGTTAACACTGAATGCGATCCATCAAATTATGAGAAAGCCACAAAGAAGAAAAAATGCCCTGCCCCTGGATGCAGAGAGGTGTTAGTATTCTCAAACACCATTAAGTGCAGGGACTGCATGATAGACCATTGTTTGAAGCACCGCTTTGGACCTGCACACAAGTGTCCTGGTCCCAAAAAGTTGGAAACAAGCTTTTCATTTATGAGTCTTGTGAATAGAAATAGAAAAGAGGAGCCAAAACCCAATTTGGCTTCAGCCTCATCATCTAAATGGACAACAGGCCTTTTTAATGTAGCTTCTAGTATTATGGCTTCAGCAGAAGCAGGCATTTCCAAATTGAGCGGTGAAACTAACCAAAGCCAGCAGACGACAAGGAATGGGATGGGACAAAGCAGTGGCAGTGGAAATAGAAACGGTTTAGTGGAGCAATGTCCTCAGTGTGGTGCTAAGTTTTCCTCGGTCACCACCTTGGTCGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGTCCTGGGGCAAAGAAGGTGACAATTGATGCATGTCCGAAATGTAGTAGGGGATTTGTAGACCCAGTTGCTCTTGTGGAACATGTTGAGAGGGACCATGGTGGTAGTTCCAGAGCTTAG 876 0.4406 MGTPEFPNLGKHCSVSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHNCTKPNKHDVTVVICPLCAKGVRLIPDQDPNITWENHVNTECDPSNYEKATKKKKCPAPGCREVLVFSNTIKCRDCMIDHCLKHRFGPAHKCPGPKKLETSFSFMSLVNRNRKEEPKPNLASASSSKWTTGLFNVASSIMASAEAGISKLSGETNQSQQTTRNGMGQSSGSGNRNGLVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRPGAKKVTIDACPKCSRGFVDPVALVEHVERDHGGSSRA* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0209 291 Pfam C2H2-type zinc finger 225 247 - -
Amo16g0209 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 254 IPR013087 -
Amo16g0209 291 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Amo16g0209 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 290 IPR013087 -
Amo16g0209 291 MobiDBLite consensus disorder prediction 196 221 - -
Amo16g0209 291 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Amo16g0209 291 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Amo16g0209 291 Gene3D - 2 60 IPR035896 -
Amo16g0209 291 ProSitePatterns Zinc finger C2H2 type domain signature. 264 285 IPR013087 -
Amo16g0209 291 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Amo16g0209 291 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Amo16g0209 291 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Amo16g0209 291 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 291 - -
Amo16g0209 291 SMART c2h2final6 262 285 IPR013087 -
Amo16g0209 291 SMART c2h2final6 224 247 IPR013087 -
Amo16g0209 291 Gene3D Classic Zinc Finger 191 290 - -
Amo16g0209 291 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Amo16g0209 291 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Amo16g0209 291 ProSitePatterns Zinc finger C2H2 type domain signature. 226 247 IPR013087 -
Amo16g0209 291 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 291 - -
Amo16g0209 291 Gene3D - 80 151 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0209 Amo-Chr16 3084195 3086608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0209 1 291 C2H2 Transcription Factor Family AT2G41835 61.856 1.23e-123 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g0209 zf-AN1 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0209 - - gmx:100806459 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0209 16 3084195 3086608 Amo16g0209 16 3084195 3086608 ECH