Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0200 ATGAATCACTTGACTGTTGAGACTGAAGATTCTTTTGCTGGCTTGCTTGAGCTTGCAGCCAATAACGATGTGGATGGTTTCAAACGAATGATTGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGCTGTGGTATGGCCGTCGGAAGGGATCAAAACAGATGGTCAATGAACAAAGAACACCTTTGATGGTTGCTGCTATCTATGGTAGCATCGATGTTATGAGAATGATTCTTTCACTCTCTGAAGCTGATATCAACCGGCCTTGTGGTGCTGACAAGAGCACTGCCCTTCATTGTGCAGCATCCGGTGGTTCCGAAAATGCTGTGGATGCTGTGAAGCTGCTTCTTGCGGCAGGTGCTGATCCAAATTCTGTGGATGCCAATGGGAATCGTCCCATAGATGTTATTGTTTCTCCTCCTAAGCTTGAGTCTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGATTCTATTACTGGGTGTAATTTGAGGGTAATCACAAACACATTTAATTCATATTCTCCACCTTTGTCAACTTCACCTGAGAATGGATCCCCTTCTGCACCAGATTTCCAATTGAAGTTAAAGTCAAGTGATGTCCCTGCATCGTCTGTGTCTGAGAAGAAAGAATATCCGGTTGATCCATCCCTTCCGGACATTAAGAACAGTATTTATTCAACCGACGAGTTCCGAATGTATTCATTCAAGGTTCGACCTTGTTCTCGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTGCATCCAGGGGAGAATGCTCGGAGAAGGGACCCAAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGGGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAATACAGGACTCGTCTTTGCAAGGATGGGACAAGTTGTTCCAGAAGAGTCTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGGCCCTTATATGTTTCAACTGGTTCTGCGGTTCCCTCTCCCCGTTCAAGCACGTCTTCGGCCATGGACTTCGCTGCGGCCATGAGCATGTTGCCTGGCTCTCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCAATGTCACCTTCTGCAAATGGCATGTCGCACTCCTCTGTTGCATGGCCGCAGCCAAATGTTCCAGCCTTGCATCTTCCAGGAAGTAACCTTCAGTCTAGTCGGCTGAGATCTTCTCTCAATGCTAGAGATATCCCTATGGATGACTTTGACATGTTGTCTGATTATGATCAGCAGCAGCAGCTCATGAATGAGTTGTCTTGCCTCTCTCCACAGCCTATGAATTCTAATTCACTAAATCGCTCTGGTCGCATGAAGCCGCTGACTCCGTCAAACCTTGATGATCTTTTTTCTGCTGAGAGTTCTTCACCTCGTTTTGCCGATCCAGCTCTGACATCAACTGTCTTTTCTCCAACTCACAAATCAGCCGTCTTCAATCAATTTCAACAGCAGCAAAGCTTGTTGTCACCTATTAATACAAATTTCTCGTCTAAAAATGTTGATCATCATTTATTGCAGGCCTCTTTTGGGGTTCAGGCATCAGGAAGAATGTCTCCGCGAACTGTGGAGCCTATTTCTCCAATGAGCTCTAGGCTTTCGATGCTAGCTCAACGCGAGAAGCAGCAACAGTTTCGGAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTACTGCAGCAGCAGCTGCTTCCGTCAATTCTTGGTCAAAATGGGGATCCCCCAATGGTAAGGTGGATTGGGCAGTAGGTGCGGATGAATTAGGTGGTGGTGGTAAGCTGCGTAGATCTTCGTCATTTGAGCTTGGCAACAATGGGGAGGAGCCTGATTTGTCATGGGTGCAGTCACTTGTCAAGGAATCTCCAACTGAAATCAAAGAGAAGTTGGCCACTAATGTCTCCGGTGCTGCAGCTGCTGGATCCTTGAATGAAGGATCAAATATGGGAACACAAATGGAGTCTGTTGATCATGCCGTATTGGGAGCATGGCTCGAACAGATGCAGCTTGACCATCTTGTGGCACAGCAAAATTAA 2109 0.468 MNHLTVETEDSFAGLLELAANNDVDGFKRMIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAAIYGSIDVMRMILSLSEADINRPCGADKSTALHCAASGGSENAVDAVKLLLAAGADPNSVDANGNRPIDVIVSPPKLESVKNSLEELLQTDDSITGCNLRVITNTFNSYSPPLSTSPENGSPSAPDFQLKLKSSDVPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPMDDFDMLSDYDQQQQLMNELSCLSPQPMNSNSLNRSGRMKPLTPSNLDDLFSAESSSPRFADPALTSTVFSPTHKSAVFNQFQQQQSLLSPINTNFSSKNVDHHLLQASFGVQASGRMSPRTVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSATAAAAASVNSWSKWGSPNGKVDWAVGADELGGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATNVSGAAAAGSLNEGSNMGTQMESVDHAVLGAWLEQMQLDHLVAQQN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0200 702 MobiDBLite consensus disorder prediction 175 205 - -
Amo16g0200 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 275 295 IPR000571 GO:0046872
Amo16g0200 702 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 699 - -
Amo16g0200 702 SUPERFAMILY Ankyrin repeat 17 138 IPR036770 -
Amo16g0200 702 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Amo16g0200 702 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Amo16g0200 702 ProSiteProfiles Zinc finger C3H1-type profile. 275 297 IPR000571 GO:0046872
Amo16g0200 702 Gene3D - 272 333 - -
Amo16g0200 702 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Amo16g0200 702 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Amo16g0200 702 PANTHER UNKEMPT FAMILY MEMBER 1 699 IPR045234 -
Amo16g0200 702 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Amo16g0200 702 MobiDBLite consensus disorder prediction 175 212 - -
Amo16g0200 702 Gene3D - 2 195 IPR036770 -
Amo16g0200 702 SMART ANK_2a 92 124 IPR002110 GO:0005515
Amo16g0200 702 SMART ANK_2a 57 87 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0200 Amo-Chr16 2853512 2857822 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0200 6 695 C2H2 Transcription Factor Family AT5G12850 54.571 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g0200 Ank_2 3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0200 - - ccaj:109796653 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0200 16 2853512 2857822 Amo16g0200 16 2853512 2857822 ECH