Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0196 ATGATTGAGTGTGATCCTTCCTCTGTGGATGAGGTTGGGCTGTGGTATGGCCGTCGGAAGGGATCAAARCAGATGGTCAATGAACAAAGAACACCTTTGATGGTTGCTGCTATCTATGGTAGCATCGATGTTATGAGAATGATTCTTTCACTCTCTGAAGCTGATATCAACCGGCCTWGTGGTGCTGACAAGAGCACTGCCCTTCATTGTGCAGCATCCGGTGGTTCCGAAAATGCTGTGGATGCTGTGAAGCTGCTTCTTGCGGCAGGTGCTGATCCAAATTCTGTGGATGCCAATGGGMATCGYCCCATAGATGTTATTGTTTCTCCTCCTAAGCTTGAGTCTGTCAAAAACAGTCTTGAAGAACTTCTTCAAACTGATGATTCTATTACTGGGTGTAATTTGAGGGTAATCACAAMCACATTTAATTCATATTCTCCACCTTTGTCAACTTCACCKGAGAATGGATCCCCTTCTGCACCAGATTTCCAATTGAAGTTAAAGTCAAGTGATGTCCCTGCATCGTCTGTGTCTGAGAAGAAAGAATATCCGGTTGATCCATCCCTTCCGGACATTAAGAACAGTATTTATTCAACCGACGAGTTCCGAATGTATTCATTCAAGGTTCGACCTTGTTCYCGTGCTTATTCCCATGATTGGACTGAATGCCCTTTTGTGCATCCAGGGGAGAATGCTCGGAGAAGGGACCCAAGGAAGTACCATTATAGTTGTGTCCCTTGTCCTGATTTTCGAAAGGGTGCTTGCCGGCGGGGAGATATGTGTGAATATGCTCATGGAGTTTTTGAGTGCTGGCTTCATCCAGCACAATACAGGACTCGTCTTTGCAAGGATGGGACAAGTTGTTCCAGAAGAGTYTGCTTCTTTGCCCACACTGCTGAAGAGCTTCGGCCCTTATATGTTTCAACTGGTTCTGCGGTTCCCTCTCCYCGTTCAAGCACGTCTTCGGCCATGGACTTYGCTGCGGCCATGAGCATGTTGCCTGGCTCTCCTTCTTCGATGTCTGTCATGTCTCCTTCACCATTCACTCCGCCAATGTCACCTTCTGCAAATGGCATGTCGCACTCCTCTGTTGCATGGCCGCAGCCAAATGTTCCAGCCTTGCATCTTCCAGGAAGTAACCTTCAGTCTAGTCGGCTGAGATCTTCTCTCAATGCTAGAGATATCCCTATGGATGACTTTGACATGTTGTCTGATTATGATCAGCAGCAGCAGCTCATGAATGAGTTGTCTTGCCTCTCTCCACAGCCTATGAATTCTAATTCACTAAATCGCTCTGGTCGCATGAAGCCGCTGACTCCGTCAAACCTTGATGATCTTTTTTCTGCTGAGAGTTCTTCWCCTCGTTTTGCCGATCCAGCTCTGACATCAACTGTCTTTTCTCCAACTCACAAATCAGCCGTCTTCAATCAATTTCARCAGCAGCAAAGCTTGTTGTCACCTATTAATACAAATTTCTCGTCTAAAAATGTTGATCATCATTTATTGCAGGCCTCTTTTGGGGTTCAGGCATCAGGAAGAATGTCTCCGCGAACTGTGGARCCTATTTCTCCAATGAGCTCTAGGCTTTCGATGCTAGCTCAACGCGAGAAGCAGCAACAGTTTCGGAGCCTTAGCTCCCGGGAACTTGGCTCCAACTCTGCTACTGCAGCAGCAGCTGCTTCCGTCAATTCTTGGTCAAAATGGGGATCCCCCAAYGGTAAGGTGGATTGGGCAGTAGGTGCKGATGAATTAGGTGGTGGTGGTAAGCTGCGTAGATCTTCGTCATTTGAGCTYGGCAACAATGGGGAGGAGCCTGATTTGTCATGGGTGCAGTCACTYGTCAAGGAATCTCCAACTGAAATCAAAGAGAAGTTGGCCACTAATGTCTCCGGTGCTGCAGCTGCTGGATCCTTGAATGAAGGATCAAATATGGGCACACAAATGGAGTCTGTTGATCATGCCGTATTGGGAGCATGGCTCGAACAGATGCAGCTTGACCATCTTGTGGCACAGCAAAATTAA 2022 0.4679 MIECDPSSVDEVGLWYGRRKGSKQMVNEQRTPLMVAAIYGSIDVMRMILSLSEADINRPXGADKSTALHCAASGGSENAVDAVKLLLAAGADPNSVDANGXRPIDVIVSPPKLESVKNSLEELLQTDDSITGCNLRVITXTFNSYSPPLSTSPENGSPSAPDFQLKLKSSDVPASSVSEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNLQSSRLRSSLNARDIPMDDFDMLSDYDQQQQLMNELSCLSPQPMNSNSLNRSGRMKPLTPSNLDDLFSAESSSPRFADPALTSTVFSPTHKSAVFNQFQQQQSLLSPINTNFSSKNVDHHLLQASFGVQASGRMSPRTVEPISPMSSRLSMLAQREKQQQFRSLSSRELGSNSATAAAAASVNSWSKWGSPNGKVDWAVGADELGGGGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATNVSGAAAAGSLNEGSNMGTQMESVDHAVLGAWLEQMQLDHLVAQQN* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0196 673 MobiDBLite consensus disorder prediction 146 168 - -
Amo16g0196 673 MobiDBLite consensus disorder prediction 418 451 - -
Amo16g0196 673 ProSiteProfiles Zinc finger C3H1-type profile. 246 268 IPR000571 GO:0046872
Amo16g0196 673 SUPERFAMILY Ankyrin repeat 27 134 IPR036770 -
Amo16g0196 673 SMART c3hfinal6 276 299 IPR000571 GO:0046872
Amo16g0196 673 SMART c3hfinal6 241 267 IPR000571 GO:0046872
Amo16g0196 673 Gene3D - 13 130 IPR036770 -
Amo16g0196 673 MobiDBLite consensus disorder prediction 418 437 - -
Amo16g0196 673 ProSiteProfiles Ankyrin repeat profile. 63 98 IPR002110 GO:0005515
Amo16g0196 673 Pfam Ankyrin repeats (3 copies) 28 97 IPR002110 GO:0005515
Amo16g0196 673 SMART ANK_2a 63 95 IPR002110 GO:0005515
Amo16g0196 673 SMART ANK_2a 28 58 IPR002110 GO:0005515
Amo16g0196 673 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 670 - -
Amo16g0196 673 Gene3D - 243 304 - -
Amo16g0196 673 PANTHER UNKEMPT FAMILY MEMBER 1 670 IPR045234 -
Amo16g0196 673 MobiDBLite consensus disorder prediction 342 364 - -
Amo16g0196 673 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 266 IPR000571 GO:0046872
Amo16g0196 673 ProSiteProfiles Ankyrin repeat region circular profile. 63 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0196 Amo-Chr16 2717347 2720080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0196 5 666 C2H2 Transcription Factor Family AT5G12850 54.319 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo16g0196 Ank_2 8e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0196 - - ccaj:109796653 1125.15