Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0193 ATGGATACTACCAAGAAATCCCCCTTGAAGCCATGGAAGAAGGGTCCAACAAGAGGGAAAGGCGGCCCCCAGAACGCTTCGTGTGAGTATCGAGGTGTTCGCCAAAGGACTTGGGGGAAATGGGTTGCAGAGATCAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACGGCCGAAGAAGCTGCCATGGCTTATGACGAGGCTGCGCGGAGGCTCTATGGACCGGACGCGTATCTTAACCTTCCCCACCTGAAACCGAGCTCCAACTTTCCCATCAAATCTGGGAAATTCAAATGGATGCCATCCAAGAACTTCATTTCAATGTTCCCTTCTTGTGGACTACTCAATGTGAATGCTCAACCTAGTGTTCATCTAATCCATCAGAGGCTTCAGCAGTTTAAGCAGAATGGGGTTGTGAATCAATCTCCTAGTTCATCCAATGATCCAAAGGGTGAAACTAAGAGTGTAAAAGAAAGCAAAGTTGATGCAGAAGAAGATCCTCCAGAGGAGAAAAACACTCGAGCATCATCGGAGGCGATGCTTGGAGATCTTCACGAGAAGCCACAGATAGACCTTCACGAGTTTCTTCAGCAGATGGGAATACTGAAAGCAGAAATACAGGAAGAAAGAACCGATAGCTCGGGGAGTTCGACAGTGCCTGAAGCTGCATCGTGCGATGACTATGCTCAACTAGGCCTGTTTTCTGACACAAGTGTTAACTGGGAGGAACTGATTGGGATGCATGGAATTGCAGATTTTCCAGAATCTGAATCCACCCAGTTGGAAGCATATGAAACAAATTATGAGCTCGATTTCTATTCTTCCATCTGGAACTTCTAA 852 0.4707 MDTTKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLKPSSNFPIKSGKFKWMPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQQFKQNGVVNQSPSSSNDPKGETKSVKESKVDAEEDPPEEKNTRASSEAMLGDLHEKPQIDLHEFLQQMGILKAEIQEERTDSSGSSTVPEAASCDDYAQLGLFSDTSVNWEELIGMHGIADFPESESTQLEAYETNYELDFYSSIWNF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0193 283 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Amo16g0193 283 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Amo16g0193 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 279 - -
Amo16g0193 283 MobiDBLite consensus disorder prediction 141 180 - -
Amo16g0193 283 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 MobiDBLite consensus disorder prediction 155 177 - -
Amo16g0193 283 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 279 - -
Amo16g0193 283 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Amo16g0193 283 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0193 Amo-Chr16 2642981 2643832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0193 5 283 AP2-EREBP Transcription Factor Family AT3G57600 49.826 4.55e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo16g0193 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0193 - - gmx:100801311 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0193 16 2642981 2643832 Amo16g0193 16 2642981 2643832 ECH