Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0192 ATGGAGAAAGGAGCGACTAAGAAGAAATCATCACCTCTCTCTCTGCAACAATTCATCACTATCACCACCCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATATCAAGCTCAATCGCCACAGGCGCATCAAGGAATTTGGATACTGCTCAAAAGAGAGGTTCCACAATCCTTAACTTGAAGTGTGTGGATGTCCAGACAGGGCTTATGGGAAAATCTCTGATTGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACACAAGTTTAGTACTCATGACGTCGTCGTTTTAAAACTCAACAAGGCTGATCTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTATAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGACATACCTGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCGCAGGATGAAAGATGCATTAGTACAGTTGAGTAAAGGAGTGCATAAGGGTCCAGCTGCTGATCTAATTCCGGTCTTATTTGGGGAGAGGTCGCCAACAATGTCCAAGAAGGATGTTTCCTTCACTCCTTTTAATACCAAACTTGATCACTCTCAGAAAGGTGCAATTTCAAAAGCCCTATCATCGAAGAATGTGTTTTTGCTACATGGACCTCCTGGAACTGGGAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTTAAACGTGGATCAAAGATTCTTGCTTGTGCTGCCTCAAACATTGCTGTTGATAACATCGTTGAGCGGCTAGTTCCACATAGGGTTAAGCTGGTGAGAGTAGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGCCTTGCAAATGACATTCGAAAAGAAATGAAGGCATTGAATGGAAAGCTATTGAAAACCAAAGACAAAAGTACAAGGAGAGACATACAAAGGGAACTTAGGACTCTATCCAAAGAGGAGCGCAAAAGGCAGCAGCTTGCTGTAACAGACGTACTTAAAACTGCAGATGTAATATTGACTACTCTGATTGGGGCCTATTCTAAGAAACTCGACAGTATGTCATTTGATTTGGTGATCATTGATGAAGCTGCTCAAGCACTTGAAATAGCATGCTGGATTCCTCTGTTGAAGGGCTCAAGATGTATCCTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGTTTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATATATGGAGACGAGGTCACATCTATGCTTACAGTCCAGTACCGTATGAATGAACTCATCATGGATTGGTCTTCTAAAGAACTTTACAACAGCAAGATCGAGGCTCATGCTAGTGTTGCTGCACACATGCTATATGATCTTGACAATGTGAAGAAGACATCGTCAACTGAACCAACTCTTCTTCTCATAGACATTGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACCCTTAATGAAGGTGAAGCTGAGGTTGCTATCGTTCATGCCAAGAGACTTGTTCAAAGTGGTGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAGAAACAATGAGAATCAGCTGAAGGATGTCGAAATCTCAACAGTTGATGGCTTTCAGGGAAGGGAGAAGGAGGCCATTATTATATCAATGGTCCGATCCAACTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGGCACGAAGGCAATGCTGTCTTGTCTGTGACACTGAGACAGTCAGTAGTGATGCATTTCTGATGCGATTGATAGAGTATTTTGAAGAGCATGGCGAGTATCAGAGTGCCTCTGAATACCAGAACGATAGATCTATGAAGGTTTTCTCAATCCAAGTCATGGAGTGCAAGGCAAAAGCAAGGGTTAACATGAATGTCAAAGAGCTGCTAATTAATGTGTCTGATGAATGGAAAATGGGAGAAGTTGGTCATTTCCCAAAGCTTGAGCAATTATAG 2088 0.4258 MEKGATKKKSSPLSLQQFITITTPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFSTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALVQLSKGVHKGPAADLIPVLFGERSPTMSKKDVSFTPFNTKLDHSQKGAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDKSTRRDIQRELRTLSKEERKRQQLAVTDVLKTADVILTTLIGAYSKKLDSMSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEIYGDEVTSMLTVQYRMNELIMDWSSKELYNSKIEAHASVAAHMLYDLDNVKKTSSTEPTLLLIDIAGCDMEEKKDEEDSTLNEGEAEVAIVHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLRNNENQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDAFLMRLIEYFEEHGEYQSASEYQNDRSMKVFSIQVMECKAKARVNMNVKELLINVSDEWKMGEVGHFPKLEQL* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0192 695 Gene3D - 443 650 IPR027417 -
Amo16g0192 695 CDD DEXXQc_SMUBP2 196 444 - -
Amo16g0192 695 SMART AAA_5 211 463 IPR003593 -
Amo16g0192 695 CDD SF1_C_Upf1 445 633 IPR041679 -
Amo16g0192 695 Pfam AAA domain 196 411 IPR041677 GO:0004386
Amo16g0192 695 Coils Coil 298 318 - -
Amo16g0192 695 PANTHER HELICASE WITH ZINC FINGER 2 8 645 - -
Amo16g0192 695 TIGRFAM TIGR00376: putative DNA helicase 345 642 IPR004483 GO:0003677|GO:0005524
Amo16g0192 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 629 IPR027417 -
Amo16g0192 695 SMART ultradead3 193 444 IPR014001 -
Amo16g0192 695 Pfam AAA domain 420 616 IPR041679 -
Amo16g0192 695 Gene3D - 23 427 IPR027417 -
Amo16g0192 695 Gene3D - 41 143 - -
Amo16g0192 695 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 8 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0192 Amo-Chr16 2636460 2642410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0192 170 380 Core DNA Replication Machinery Family AT1G08840 27.014 4.31e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0192 K19036 - gmx:100810545 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0192 16 2636460 2642410 Amo16g0192 16 2636460 2642410 ECH