Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0189 ATGGATTTCGACGAAGAAGATGACGCCGATGCTGACGACGCTGATGCTGATGCTACTGATGCTGCTGATGCTACTACTGTGACGGTTGCACTGCACATAGGGCTTCCTAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGCGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGGTGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACACTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 750 0.4813 MDFDEEDDADADDADADATDAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0189 249 Gene3D Classic Zinc Finger 134 225 - -
Amo16g0189 249 MobiDBLite consensus disorder prediction 230 249 - -
Amo16g0189 249 SMART c2h2final6 88 110 IPR013087 -
Amo16g0189 249 SMART c2h2final6 172 192 IPR013087 -
Amo16g0189 249 Gene3D Classic Zinc Finger 87 110 - -
Amo16g0189 249 MobiDBLite consensus disorder prediction 1 19 - -
Amo16g0189 249 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Amo16g0189 249 PANTHER ZINC FINGER PROTEIN WIP2 8 248 IPR043584 GO:0003700|GO:0010468
Amo16g0189 249 MobiDBLite consensus disorder prediction 41 71 - -
Amo16g0189 249 MobiDBLite consensus disorder prediction 1 21 - -
Amo16g0189 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 192 IPR013087 -
Amo16g0189 249 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 8 248 - -
Amo16g0189 249 SUPERFAMILY beta-beta-alpha zinc fingers 153 192 IPR036236 -
Amo16g0189 249 SUPERFAMILY beta-beta-alpha zinc fingers 84 110 IPR036236 -
Amo16g0189 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0189 Amo-Chr16 2581807 2583612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0189 27 249 C2H2 Transcription Factor Family AT3G57670 77.692 9.02e-142 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo16g0189 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0189 - - jre:108986074 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0189 16 2581807 2583612 Amo16g0189 16 2581807 2583612 ECH
Amo16g0189 16 2581807 2583612 Amo18g0083 18 1714764 1716579 ECH