Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0188 ATGGAGACAGATAACAACAGTGAGTCAAAGTCAAAGAAGATGGAAGACTATGAGGTGATAGAGCAAATTGGAAGAGGAGCATTTGGTTCTGCTTTTCTGGTTCTTCACAAGTCTGAGAAGAAGAGATATGTGCTGAAAAAGATTCGCTTGGCAAAGCAAACTGAGAAGTTCAAAATTACAGCACACCAAGAGATGAATCTGATTGCAAAACTAAATAACCCATATATTGTGGAATACAAAGATGCTTGGGTGGAGAAGGAGGACCATATATGCATTGTTACTGGCTACTGTGAAGGAGGTGACATGGCTGAGTACATAAAGAAATCGCGCGGATCATTTTTCCCTGAGGAGAAGGTCTGCAAATGGCTCACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTGATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACAAAAGACAATAACATTCGGCTTGGTGACTTTGGTCTTGCGAAACGGCTTAATCCAGAAGATCTTGCTTCCTCGATTGTTGGAACTCCAAATTATATGTGCCCTGAGCTTCTAGCTGATATACCTTATGGTTATAAATCTGACATGTGGTCGCTCGGTTGCTGCATGTTTGAGATTGCTGGACACCAACCAGCATTTCGTGCTCCGGACATGGCTGGACTTATTAATAAAATTAACAGATCCTCCATTTCTCCATTGCCAATTATTTATTCTTCCACACTGAAACAACTTATTAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCTGCTGAATTGTTACGCCATCCTCTTTTACAGCCTTATGTTCTCCGCTGTCAAAACGCATCATCCAATTTTCTTCCAGTATACCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCTAAAAAATCTAGTGGTGGCAAGGACCAGAGGGACAAAGACACAACATCACCAAATTATTTGGAAAGGATTCATCCGATTGAGGGAAATGGACACTTACAGCCGAGGAATCTTCCAAGTGAGGGAGAGCTAACAGCTTCAACAAGTGCAGAAGACAACCTCGAGAACCGGATGGTTGATCTTACAAGCTATATAGTGGAATCTTCTACTAGTATTAGTGGCTCAAAAGATGGATCAACAACATCAGAATCAACTATTTGTAGTGTGTGTAGGGACCCTGACTTTAAAACTAGGCCTGCAAAGGAAACTGCAAATATTGAAATCACTTCAAAGAGTACACAAGATTCTGTGCATCAAGATCATGAATTTGCTGCTGAACTTCTTCAAAACTTAGAAGGGATTGACATAAATGCTGTTACAACACTAGTTGAAGATGCTTTTTCGGATGACGGTGCTAACAATGCTGAAGCAGATAGAGAAGATGCCAAACTTGAAGACTCAAGGAAATCGGCTTCCAGTGCTGAAGCACAGAGAGAAGATGCCAAACTTGTGGACTCCATGAAATCAACAACTTCCAGTGCAGGCACCAGCAGCACTGGTAAAGATAAGTCTATTGATGAGGAAAGGTTGTTGCCGATTCTGCATCCTGTTAAGGTTGAATGTGACACCAAATCCGGAACCAGCTTGAAGGAAATCGAAAATCCTGATGCATCGAAGGAAGGCTCACAATTGAACTACTTGTCATCTGAAAGTAATGATACTCCTCCAGTCAAGGATGAATGCTCCATGCATAAAGATGAAAATGCCAATGCAGTTGATCAGACACTGAATGGCATTTCGTTAAGCACTTCGACAATCAGCGACGAAACAACGAAGTCAGAGTTGGATAGTCCTTCCCAGCAAAGGGCTGAGGCTCTTGAATCTCTGCTTGAGTTATGTGCTCAGCTACTCAAGCAAGATAAGCTCGAAGAGCTTGCGGCTGTGCTAAGACCGTTCGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTTATATCAGCACAGAAGTTTAATCCTGAAAGCTAG 1983 0.4186 METDNNSESKSKKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKITAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIVTGYCEGGDMAEYIKKSRGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNPEDLASSIVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSSISPLPIIYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCQNASSNFLPVYPIVNSKDKTKRSKKSSGGKDQRDKDTTSPNYLERIHPIEGNGHLQPRNLPSEGELTASTSAEDNLENRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCRDPDFKTRPAKETANIEITSKSTQDSVHQDHEFAAELLQNLEGIDINAVTTLVEDAFSDDGANNAEADREDAKLEDSRKSASSAEAQREDAKLVDSMKSTTSSAGTSSTGKDKSIDEERLLPILHPVKVECDTKSGTSLKEIENPDASKEGSQLNYLSSESNDTPPVKDECSMHKDENANAVDQTLNGISLSTSTISDETTKSELDSPSQQRAEALESLLELCAQLLKQDKLEELAAVLRPFGKEAVSSRETAIWLTKSLISAQKFNPES* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0188 660 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Amo16g0188 660 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 501 643 - -
Amo16g0188 660 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 11 478 - -
Amo16g0188 660 MobiDBLite consensus disorder prediction 296 319 - -
Amo16g0188 660 CDD STKc_Nek 16 271 - -
Amo16g0188 660 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 501 643 - -
Amo16g0188 660 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 11 478 - -
Amo16g0188 660 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0188 660 Gene3D Transferase(Phosphotransferase) domain 1 99 325 - -
Amo16g0188 660 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0188 660 MobiDBLite consensus disorder prediction 296 355 - -
Amo16g0188 660 SUPERFAMILY Protein kinase-like (PK-like) 14 305 IPR011009 -
Amo16g0188 660 MobiDBLite consensus disorder prediction 525 562 - -
Amo16g0188 660 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0188 660 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Amo16g0188 660 MobiDBLite consensus disorder prediction 340 355 - -
Amo16g0188 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Amo16g0188 660 MobiDBLite consensus disorder prediction 450 509 - -
Amo16g0188 660 MobiDBLite consensus disorder prediction 486 500 - -
Amo16g0188 660 MobiDBLite consensus disorder prediction 452 485 - -
Amo16g0188 660 MobiDBLite consensus disorder prediction 538 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0188 Amo-Chr16 2544363 2549421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0188 10 272 MAP Kinase Kinase Kinase AT3G13530 32.075 1.70e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Amo16g0188 Pkinase 8.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0188 K08857 - gmx:100793379 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0188 16 2544363 2549421 Amo16g0188 16 2544363 2549421 ECH
Amo16g0188 16 2544363 2549421 Amo12g1757 12 84441893 84450328 PCT
Amo12g1757 12 84441893 84450328 Amo16g0188 16 2544363 2549421 PCT