Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0186 ATGGCGAAGAAGGACAAAGCTAGGGTTCCCGATGACGAACAACAAATCGATTCTGAACCTAACAACAACCATCAGACCCTCTACGAGGTTCTTGGTGTGGAAAGAACTGCCTCTCAGCAGGAAATTAAGAAGGCATACTACAAGCTCGCATTGCGGCTTCATCCTGACAAGAACCCTGGCGATGAGGAAGCTAAAGAGAAGTTTCAGCAACTGCAAAAAGTAATCTCAATTCTTGGGGATGAAGAGAAACGATCGCTTTATGATCAGACTGGTTGTGTTGACGATGCTGACCTCTCTGGTGATGTTGTTCGGAATCTTAGTGAGTTTTTCAGAACAATGTATAAGAAGGTAACTGAAGCTGATATTGAGGAGTTTGAAGCTAACTATAGGGGATCTGACTCAGAGAAAAATGACTTAATTGATTTGTACAAGAAGTGCAAGGGTAATATGGACAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGATTCACATCGATTCAAGGATATACTTGACGAGGCAATTGCTGCTGGAGAACTAAAGGAAACAAAAGCTTACCAAAAATGGGCAAAGAAAGTATCTGAAATCAAACCACCAACTAGTCCTTTAAAGAGGAGGGCGGAGTCCAGTAAGAAGCCAGAAACAGATCTTTATGCAATGATAGCACAACGCCAAAATCAGAGGAAAGATCGATTTGATTCATTGTTCTCATCACTGGCTTCAAAATATGGTGGAGGTGATATGCCTGAGCCCTCTGAAGAGGAATTTGAAGCTGCACAGAGAAAGCTGGATAGTGGAAGATCCTCAAAAAAGGCAAAGCAATCAAAGCGGAAGTAA 843 0.4164 MAKKDKARVPDDEQQIDSEPNNNHQTLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRSLYDQTGCVDDADLSGDVVRNLSEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMDRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKETKAYQKWAKKVSEIKPPTSPLKRRAESSKKPETDLYAMIAQRQNQRKDRFDSLFSSLASKYGGGDMPEPSEEEFEAAQRKLDSGRSSKKAKQSKRK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0186 280 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Amo16g0186 280 CDD DnaJ 26 80 IPR001623 -
Amo16g0186 280 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 3 276 - -
Amo16g0186 280 MobiDBLite consensus disorder prediction 200 215 - -
Amo16g0186 280 Gene3D DnaJ domain 11 100 IPR036869 -
Amo16g0186 280 SUPERFAMILY Chaperone J-domain 24 97 IPR036869 -
Amo16g0186 280 PRINTS DnaJ domain signature 28 46 IPR001623 -
Amo16g0186 280 PRINTS DnaJ domain signature 46 61 IPR001623 -
Amo16g0186 280 PRINTS DnaJ domain signature 63 83 IPR001623 -
Amo16g0186 280 PRINTS DnaJ domain signature 83 102 IPR001623 -
Amo16g0186 280 MobiDBLite consensus disorder prediction 199 218 - -
Amo16g0186 280 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g0186 280 SMART dnaj_3 25 83 IPR001623 -
Amo16g0186 280 MobiDBLite consensus disorder prediction 242 280 - -
Amo16g0186 280 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 3 276 IPR042977 -
Amo16g0186 280 MobiDBLite consensus disorder prediction 1 24 - -
Amo16g0186 280 MobiDBLite consensus disorder prediction 256 272 - -
Amo16g0186 280 Pfam DnaJ domain 27 88 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0186 Amo-Chr16 2529903 2532655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0186 28 88 C2H2 Transcription Factor Family AT1G74250 39.394 7.60e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0186 K09529 - gmx:100781463 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0186 16 2529903 2532655 Amo16g0186 16 2529903 2532655 ECH
Amo16g0186 16 2529903 2532655 Amo12g1759 12 84476506 84479560 PCT
Amo16g0186 16 2529903 2532655 Amo02g1936 02 62824412 62827495 PCT
Amo12g1759 12 84476506 84479560 Amo16g0186 16 2529903 2532655 PCT
Amo02g1936 02 62824412 62827495 Amo16g0186 16 2529903 2532655 PCT