Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0184 ATGGCTACTACTAAATTCTGTACATACCCGTTATTCCTTCTTCTTCTTCTTCTCTCTCTTACCTTTGCATTCTTTATCAAGCTTAGTTCATCATCATCAGAGGTTGACACCCTTCTGTCCTTCAAGGCCTCCATTGAAGACTCCAAGAATGCCTTGTCAACTTGGTCAAACACTACATCAACACACCACTGTAACTGGACTGGAATCTCATGCTCCATTAGCACAACCCCACCTTCTGTAACTTCAATCAGCCTTCAAAGTTTGAATCTTTCTGGTGATATCTCAGCTTCCATATGTGACCTTCCAAGTTTGTCTTATCTCAACCTTGCTGACAACATCTTCAACCAACCCATACCTCTTCATCTTTCACAGTGCAGCTCACTGGAGACTCTAAACATCAGCAACAACCTCATATGGGGAACTATCCCATCTCAGATTTCTCAGTTTTCTTCTCTCAAAGTTCTTGATTTCAGCAGAAACAAAATTGAAGGAATCATCCCTGATACCTTAGGCTCACTAAAGAATCTCCAAGTACTTAACATGGGGAGCAACTTGCTCTCAGGTTCCGTTCCTGTTATCTTTGGAAATTTAACCAAGCTTGAGGTTCTTGATTTGTCCATGAATCCAACCTTGGAGAGTGAGATTCCACATGACATTGGTGAACTCAAGAACCTGAAGCAGCTTATGCTGCAGGGTTCTTCACTCCATGGAGAAATTCCACCTTCTTTTGTGGGATTACTTGGCTTAACTCATTTAGATCTCTCTGAGAACAATCTCACAGGTAAAGTTCCTCAAGAACTTTCTTCTTCTCTCAAGAACCTTGTTTCCTTTGATGTCTCACAGAACAAGCTCTCAGGGCCATTCCCAAGTGGAATTTGCAAAGGCCTTATAATACATCTCAGCCTCCACACAAATGCATTCACTGGTTTAATACCAAACAATTCCATTGGTGAATGCAAGAGTCTTGAGAGGTTCCAAGTTCAAAACAATGGTTTTTCTGGTAACTTACCTTCTGCATTGTGGTCATTGCCAAAAGTGAAGCTCATTAGAGCTGAGAACAACAGATTCTCAGGTCAAATACCTGAATCAGTATCTGAAGCTTCACAATTGGAGCAAGTTCAGCTTGACAACAACACCTTCTCTGGCAAAATTCCTCAAGGTCTTGGCCTTGTTAAGAGCTTATACAGATTCTCAGCATCACTCAACCACTTCTATGGTGAAATCCCACCAAATTTTTGTGACTCACCAGTTATGAGCATTGTGAACCTCTCACACAATTCTCTCTCTGGTCAAATCCCAGAACTGAATAAATGCAGGAAGCTAGTTTCACTTTCTTTGGCTGATAATAGTTTAACTGGAGAAATACCTTCTTCTCTTGCTGAGCTTCCAGTGTTGACTTACATTGACCTCTCAGATAACAACCTCACTGGTCCAATCCCAGAAGGGCTTCAGAATCTGAAGCTTGCACTTTTCAATGTTTCCTTCAATGATCTTTCAGGTAAAGTACCATATTCCTTGATTTCAGGTCTTCCTGCTTCATTCTTGGAAGGAAATCCTGGTCTTTGTGGCCCTGGATTGGACAATTCTTGTTCTGATGAAGTTGGAAGACACAAAAATGGTGGCATTACAACCTTAACATGTGCACTGATCTCCTTAGCCTTTGTTGCTGGTACTGCCATTGTTGCTGGTGGCTTTGTATTGTATAGGAGATCATGTAAGGGAAACAATGAAGTAGGTGTTTGGAGATCAGTGTTCTTCTATCCCCTCAGGATCACTGAGCATGATCTCCTCATAGGAATGAATGAGAAGAGTTCAATGGGAAATGGTGGCATTTTCGGAAGAGTTTATGTTATGAACTTGCCAAGTGGTGAACTTGTTGCTGTGAAGAAGTTAGTGAATTTTAGGAATCAGTCCTCAAAGAGTTTGAAATCCGAGGTCAAGACTCTGGCAAAGATTAGGCACAAGAACATTGTTAAGATTCTGGGGTTCTGCCACTCTGATGAGTCAGTTTTTCTTATCTATGAGTTCTTGAATGAAGGGAGCTTAAGGGATTTGATTTCGAGACCGGATTTTAAGCTGGAGTGGAGTGTTAGGTTGAGGATTGCCATTGGAGTTGCTCAGGGACTTGCATATCTTCACAAGGACTACGCGCCACGATTGCTTCACCGCAATGTCAAGTCCAGTAACATTCTTTTGGATGCAAACTTTGAGCCAAAGCTCACAGATTTTGCTCTTGATAGAGTTCTTGGAGAAGCTGCATTTCAGTCTACTTTGGATTCTGAAGCACCATCTTCCTGCTACATTGCACCAGAATATGGTTACAGCAAGAAAGCCACTGAACAATTAGATGTGTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGAAGACAAGCTGAGAAAGCAGAATCAAGTGAATCCATTATTGACATAGTGAAGTGGGTTAGGAGGAAAGTGAATATAGCAAATGGGGTGCAACAAATTCTTGATCAAAGAATATCATCAAGCACATGCCACCAAGAAATGGTTGGAGCCTTAGACATTGCTCTCCGTTGCACCTCAGTGGTTCCTGAGAAGAGGCCATCAATGGTGGAAGTTGTGAAGTCTCTTCAGTCCCTTGAGTTAAGGACTTGCATTGCAAACTTGCAAGATCAACCACCAAATGAGGAACACTCCAATATTCCAATCTGA 2694 0.4176 MATTKFCTYPLFLLLLLLSLTFAFFIKLSSSSSEVDTLLSFKASIEDSKNALSTWSNTTSTHHCNWTGISCSISTTPPSVTSISLQSLNLSGDISASICDLPSLSYLNLADNIFNQPIPLHLSQCSSLETLNISNNLIWGTIPSQISQFSSLKVLDFSRNKIEGIIPDTLGSLKNLQVLNMGSNLLSGSVPVIFGNLTKLEVLDLSMNPTLESEIPHDIGELKNLKQLMLQGSSLHGEIPPSFVGLLGLTHLDLSENNLTGKVPQELSSSLKNLVSFDVSQNKLSGPFPSGICKGLIIHLSLHTNAFTGLIPNNSIGECKSLERFQVQNNGFSGNLPSALWSLPKVKLIRAENNRFSGQIPESVSEASQLEQVQLDNNTFSGKIPQGLGLVKSLYRFSASLNHFYGEIPPNFCDSPVMSIVNLSHNSLSGQIPELNKCRKLVSLSLADNSLTGEIPSSLAELPVLTYIDLSDNNLTGPIPEGLQNLKLALFNVSFNDLSGKVPYSLISGLPASFLEGNPGLCGPGLDNSCSDEVGRHKNGGITTLTCALISLAFVAGTAIVAGGFVLYRRSCKGNNEVGVWRSVFFYPLRITEHDLLIGMNEKSSMGNGGIFGRVYVMNLPSGELVAVKKLVNFRNQSSKSLKSEVKTLAKIRHKNIVKILGFCHSDESVFLIYEFLNEGSLRDLISRPDFKLEWSVRLRIAIGVAQGLAYLHKDYAPRLLHRNVKSSNILLDANFEPKLTDFALDRVLGEAAFQSTLDSEAPSSCYIAPEYGYSKKATEQLDVYSFGVVLLELVSGRQAEKAESSESIIDIVKWVRRKVNIANGVQQILDQRISSSTCHQEMVGALDIALRCTSVVPEKRPSMVEVVKSLQSLELRTCIANLQDQPPNEEHSNIPI* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0184 897 CDD STKc_IRAK 606 874 - -
Amo16g0184 897 Gene3D Ribonuclease Inhibitor 31 189 IPR032675 -
Amo16g0184 897 SMART LRR_typ_2 462 485 IPR003591 -
Amo16g0184 897 SMART LRR_typ_2 173 196 IPR003591 -
Amo16g0184 897 SMART LRR_typ_2 197 222 IPR003591 -
Amo16g0184 897 SMART LRR_typ_2 271 295 IPR003591 -
Amo16g0184 897 SMART LRR_typ_2 149 172 IPR003591 -
Amo16g0184 897 SMART LRR_typ_2 246 270 IPR003591 -
Amo16g0184 897 Gene3D Phosphorylase Kinase; domain 1 595 676 - -
Amo16g0184 897 SUPERFAMILY L domain-like 31 294 - -
Amo16g0184 897 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Amo16g0184 897 SUPERFAMILY Protein kinase-like (PK-like) 609 871 IPR011009 -
Amo16g0184 897 Gene3D Ribonuclease Inhibitor 190 294 IPR032675 -
Amo16g0184 897 Gene3D Ribonuclease Inhibitor 295 538 IPR032675 -
Amo16g0184 897 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Amo16g0184 897 Pfam Leucine rich repeat 127 186 IPR001611 GO:0005515
Amo16g0184 897 Pfam Leucine rich repeat 439 498 IPR001611 GO:0005515
Amo16g0184 897 ProSiteProfiles Protein kinase domain profile. 601 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0184 897 Gene3D Transferase(Phosphotransferase) domain 1 677 887 - -
Amo16g0184 897 PANTHER - 8 881 - -
Amo16g0184 897 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 881 - -
Amo16g0184 897 Pfam Protein kinase domain 602 869 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0184 897 SUPERFAMILY RNI-like 239 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0184 Amo-Chr16 2507966 2511697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0184 34 874 Receptor kinase-like Gene Family AT5G06940 64.142 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo16g0184 Pkinase 1.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0184 - - adu:107492922 1734.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0184 16 2507966 2511697 Amo16g0184 16 2507966 2511697 ECH