Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0180 ATGGAGCAAGCCACAGGAGTGCTGCGTGGATCCACTCACGACGACGTCGTATTAGAGTCAATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCCGCGCCAGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCCCGGCCGCCGATCGGGAACCGCCGTGCCATGTTAGCACCAACCAAAAACCCTACCTTCTTTGCTCCTACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCCGCCAAGTTCTCCGTCTTCGCTGGCGAGAACTCGCCGCCGGAGGATGCGGCGCGCCTGGCTCCAGTAGCTGTATCCGGCGTGGTGAAGAATGAGCCGCAGGAAACCGACTCGAACCCCAGCTCCACGCAGGGTTGCGTTTCGGATCCCGCTGTTGATACCAAGAATCAGAAGACCGCGAAGAGGAAGGAGCGAGAGAAGAAGGGTAAGGGCTCGTCGAAGAAGAGCAAGAGCGTCGCCGATGAGTGTTCCGGCGACGGTGAAAAGCTTCCATATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACGGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAACGCTCGGATGAAGCTTTTGCAGGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCCTTGGTTCTGGATGAAATTATCAACCACGTGCAATCTCTACAGCGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCCGTTAATCCAAGAATTGATTTCAGCCTGGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTTCACCTGTTATGTGGCCAGAAAACCTAGCCAATGGTAACAGACAGCATTTTCAACAACATTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACACTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCTCTGCAGTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.5298 MEQATGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCPAADREPPCHVSTNQKPYLLCSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPVAVSGVVKNEPQETDSNPSSTQGCVSDPAVDTKNQKTAKRKEREKKGKGSSKKSKSVADECSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMASPVMWPENLANGNRQHFQQHWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLQSNQLKMEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0180 362 Coils Coil 242 262 - -
Amo16g0180 362 MobiDBLite consensus disorder prediction 132 186 - -
Amo16g0180 362 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Amo16g0180 362 SMART finulus 208 258 IPR011598 GO:0046983
Amo16g0180 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Amo16g0180 362 Gene3D - 199 271 IPR036638 GO:0046983
Amo16g0180 362 CDD bHLH_AtBPE_like 192 277 - -
Amo16g0180 362 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 362 - -
Amo16g0180 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Amo16g0180 362 MobiDBLite consensus disorder prediction 172 186 - -
Amo16g0180 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 362 IPR024097 GO:0006355
Amo16g0180 362 MobiDBLite consensus disorder prediction 132 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0180 Amo-Chr16 2477146 2482329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0180 10 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.785 1.01e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0180 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0180 - - gmx:100814124 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0180 16 2477146 2482329 Amo16g0180 16 2477146 2482329 ECH