Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0174 ATGGAGCAAGCCACAGGAGTGCTGCGTGGATCCACTCACGACGACGTCGTATTAGAGTCAATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCCGCGCCCGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCCCGGCCGCTGCTCGGGAACCGCCGTGCCATGTTAGCACCAACCAAAAACCCTACCTTCTTTGCTCCTACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCCGCCAAGTTCTCCGTCTTCGCTGGCGAGAACTCGCCGCCGGAGGATGCGGCGCGCCTGGCTCCAGTAGCTGTATCCGGCGTGGTGAAGAATGAGCCGCAGGAAACCGACTCGAACCCCAGCTCCACGCAGGGTTGCGTTTCGGATCCCGCTGTTGATACCAAGAATCAGAAGACCGCGAAGAGGAAGGAGCGAGAGAAGAAGGGTAAGGGCTCGTCGAAGAAGAGCAAGAGCGTCGCCGATGAGTGTTCCGGCGACGGTGAAAAACTTCCATATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAACGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCCTTGGTTCTGGATGAAATTATCAACCACGTGCAATCTCTACAGCGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCTGTTAATCCAAGAATTGATTTCAGCCTGGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTTCACCTGTTATGTGGCCAGAAAACCTAGCCAATGGTAACAGACAGCATTTTCAACAACAGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACACTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCTCTGCAGTCAAATCAATTGAAGATGGAGCTCTGA 1089 0.528 MEQATGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCPAAAREPPCHVSTNQKPYLLCSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPVAVSGVVKNEPQETDSNPSSTQGCVSDPAVDTKNQKTAKRKEREKKGKGSSKKSKSVADECSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMASPVMWPENLANGNRQHFQQQWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLQSNQLKMEL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0174 362 Coils Coil 242 262 - -
Amo16g0174 362 MobiDBLite consensus disorder prediction 132 186 - -
Amo16g0174 362 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Amo16g0174 362 SMART finulus 208 258 IPR011598 GO:0046983
Amo16g0174 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Amo16g0174 362 CDD bHLH_AtBPE_like 192 277 - -
Amo16g0174 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Amo16g0174 362 MobiDBLite consensus disorder prediction 172 186 - -
Amo16g0174 362 Gene3D - 199 271 IPR036638 GO:0046983
Amo16g0174 362 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 362 - -
Amo16g0174 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 362 IPR024097 GO:0006355
Amo16g0174 362 MobiDBLite consensus disorder prediction 132 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0174 Amo-Chr16 2359274 2364498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0174 10 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.047 1.83e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0174 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0174 - - gmx:100814124 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0174 16 2359274 2364498 Amo12g1770 12 84834092 84840233 PCT
Amo16g0174 16 2359274 2364498 Amo02g1953 02 63337194 63343329 PCT
Amo12g1770 12 84834092 84840233 Amo16g0174 16 2359274 2364498 PCT
Amo02g1953 02 63337194 63343329 Amo16g0174 16 2359274 2364498 PCT