Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0160 ATGGATTCCAGTTCCCGTTATCACCAACAGCAGCTAAACTCATCGTCGTCATCAGCATCAGGATTGCTTCGATTTCGCTCTGCTCCTCCTTCAGTCCTCGAACAGTTACAGGTTGTTGAAGGTTCTTGTTCATCTGAACAGGAGAGGTCGTCGTCGTCGTCGTTCTCGAGATTCTTCAGCTCCAACAACAATAAGCCTTCTTCAACAACAAAACCGCCATCACTTTCTTCGATGAATTCGAATCATCGCTTCACCAGACTCCACAACTCGTCAACTGCACCTTCCGCTTCCACTTCCTCTGGAACGGATCTACCAAGGCAGAGCACTTTTCCAGCTTCGCATTTCTCCTTCCACGATAATAACGGGTATGATACTAATGCAAATACTATGACGAAAGGTGTTGGAAACTACAGTGGCAGTGATGAACTTAGTCTATCCACAATGAACAGATTCAATAACCAAATTAGCTTCTCATCATCAAGAAGCCCTTCTTCTTCAGCAACGGCAACTAATAATAATAACCGTAATGGTGGATTATTCTTCCCTAATTATGGTTCTTGGAATGAGACATCATACAAGAGGGACGACCAAAATAGGATTCATAAGTTAATTTTTTATGCTAATCAGAATGAAGAGTTTGGGAATAATAAAGTTGTTCATACACTATCGCATCAACTAAGTTTTCCAAAAGCGGAACCGGAGATGTTTGTAATGGAGAATATGATTCACTTCCCATTATTAGATGCTGTTCCATGTAAAATTAGAGCCAAAAGAGGATGTGCTACTCATCCCAGAAGCATTGCCGAAAGGGTGAGAAGGACTCGGATCAGTGAACGAATGAAAAAATTACAAGAGCTTGTTCCGAACATGGACAAGCAAGCCAGCACAGCAGACATGTTGGACATGGCTGTAGGATACATAAAAGATCTTCAGAAACAATTTAAGGTGCGTAACTGA 957 0.418 MDSSSRYHQQQLNSSSSSASGLLRFRSAPPSVLEQLQVVEGSCSSEQERSSSSSFSRFFSSNNNKPSSTTKPPSLSSMNSNHRFTRLHNSSTAPSASTSSGTDLPRQSTFPASHFSFHDNNGYDTNANTMTKGVGNYSGSDELSLSTMNRFNNQISFSSSRSPSSSATATNNNNRNGGLFFPNYGSWNETSYKRDDQNRIHKLIFYANQNEEFGNNKVVHTLSHQLSFPKAEPEMFVMENMIHFPLLDAVPCKIRAKRGCATHPRSIAERVRRTRISERMKKLQELVPNMDKQASTADMLDMAVGYIKDLQKQFKVRN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0160 318 Pfam Helix-loop-helix DNA-binding domain 265 311 IPR011598 GO:0046983
Amo16g0160 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 310 IPR011598 GO:0046983
Amo16g0160 318 PANTHER TRANSCRIPTION FACTOR BHLH130 17 316 - -
Amo16g0160 318 SMART finulus 266 316 IPR011598 GO:0046983
Amo16g0160 318 Gene3D - 257 317 IPR036638 GO:0046983
Amo16g0160 318 MobiDBLite consensus disorder prediction 39 117 - -
Amo16g0160 318 MobiDBLite consensus disorder prediction 156 175 - -
Amo16g0160 318 MobiDBLite consensus disorder prediction 1 23 - -
Amo16g0160 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 316 - -
Amo16g0160 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 315 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0160 Amo-Chr16 2120094 2123039 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0160 18 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 39.722 1.75e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo16g0160 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0160 - - ahf:112758816 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0160 16 2120094 2123039 Amo16g0160 16 2120094 2123039 ECH
Amo16g0160 16 2120094 2123039 Amo18g0072 18 1551861 1554774 ECH
Amo16g0160 16 2120094 2123039 Amo13g0565 13 7170646 7174327 ECH
Amo16g0160 16 2120094 2123039 Amo12g1782 12 85725200 85728152 PCT
Amo16g0160 16 2120094 2123039 Amo02g1967 02 64441243 64444458 PCT
Amo12g1782 12 85725200 85728152 Amo16g0160 16 2120094 2123039 PCT
Amo02g1967 02 64441243 64444458 Amo16g0160 16 2120094 2123039 PCT