Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0146 ATGGGTTCGAGTGTTAAGAGCAGCAACCAAGGAAGCACTCAACTTGAACCACTTCAACAACAACATCATCATCGTCATCAAATACAGCAAGAGCACCAAATCTCTTTCGGGATGATGCAATCTCCTTCATCATCATCCTCTATCATCCCGGGAAACTTGTTAAACAAGGATTCAGGTGATGGTGGAGCTTATGATTTGGGTGAACTGGACCAAGCCCTTTTTCTCTACCTCGATGGACAAGCCGATCCCTCAAATACTCTTCATCAAGACCAAAGACAGAAGTCATCATCATCCGGAATGAGGCCTCATACTCTCAACATTTTCCCCTCTCAGCCTATGCACGTTCACCCATCATCATCCAATTCCAAGGCAAGTATGGAGTTAGTTTCTGCTTCCAAGAACGTACCCGCTTCTGCCACTGCTCCTCCTCCTCAACCACCTAAACCTGTCAAGCGAGAGAGTAACCGCAAGGGTCCGACCTCAAGTTCTGAACAAGAAGGGCCCAAAACACCAGACCCCAAGACACTGAGACGACTTGCTCAGAATAGAGAGGCAGCTCGCAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAGCAGCTAGAATCCAGTAGGATTAGGCTTAATCAGATTGAGCAAGAGCTACAGCGTGCTAGATCTCAAGGCATATTCTTCGGTGGAAGTGGAGTTATGGGTGGAGAACAAGGTCTTGGTGTGGGTATTAATGGCATAAGCACAGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCTAGAGGAGCACCACCGCCTAGTGTGCGAGCTGAGGGCGGCGGTGCAAGAACACCTACCTGAGAACGACCTCAGACTCTTTGTGGACAATTGCTTGGCGCATTACGACCAAGTTATGAACCTCAAGGGTTTAGTGGCCAGATCCGACGTCTTCCACCTTGTTTCCGGCATGTGGAAGACTCCGGCTGAGCGTTGCTTTATGTGGATCGGTGGATTCAGGCCCTCAGAACTCATTAAGATTATGGTGAGTCAAATAGAGCCTCTGACGGAGCAACAAATACTTGGGATATGTGGGTTGCAACAATCAACACAAGAAGCAGAAGAGGCTCTTTCCCAAGGCCTTGAGGCTCTCAATCAATCTCTCCTGAACACTATCACATCAGATTCTTTGAGCTCTCCTCCTGTTATGGCTACCTACATGGGACAGATGGCTCTCGCCATGAACAAGCTCGCTACTCTTGAAGATTTCGTCAAACAGGCAGATAATCTACGGCAGCAAACGGTGCACCGGCTGCATGAGATCCTAACGACGCGGCAGGCGGCGAGGTGTTTTCTGGCGATAGCGGAGTACTTCCATCGCCTGAGAGCCCTCAGTTCTCTCTGGTTGTCCCGCCCTCGCCAGGATCAGTAG 1401 0.4925 MGSSVKSSNQGSTQLEPLQQQHHHRHQIQQEHQISFGMMQSPSSSSSIIPGNLLNKDSGDGGAYDLGELDQALFLYLDGQADPSNTLHQDQRQKSSSSGMRPHTLNIFPSQPMHVHPSSSNSKASMELVSASKNVPASATAPPPQPPKPVKRESNRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQIEQELQRARSQGIFFGGSGVMGGEQGLGVGINGISTEAAMFDVEYARWLEEHHRLVCELRAAVQEHLPENDLRLFVDNCLAHYDQVMNLKGLVARSDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIMVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLLNTITSDSLSSPPVMATYMGQMALAMNKLATLEDFVKQADNLRQQTVHRLHEILTTRQAARCFLAIAEYFHRLRALSSLWLSRPRQDQ* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0146 466 SUPERFAMILY Leucine zipper domain 174 216 IPR046347 GO:0003700|GO:0006355
Amo16g0146 466 SMART brlzneu 170 256 IPR004827 GO:0003700|GO:0006355
Amo16g0146 466 Coils Coil 193 220 - -
Amo16g0146 466 Pfam bZIP transcription factor 174 202 IPR004827 GO:0003700|GO:0006355
Amo16g0146 466 CDD bZIP_HBP1b-like 174 226 - -
Amo16g0146 466 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Amo16g0146 466 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Amo16g0146 466 MobiDBLite consensus disorder prediction 84 177 - -
Amo16g0146 466 Gene3D - 173 221 - -
Amo16g0146 466 MobiDBLite consensus disorder prediction 1 18 - -
Amo16g0146 466 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 76 464 - -
Amo16g0146 466 ProSiteProfiles DOG1 domain profile. 247 461 IPR025422 GO:0006351|GO:0043565
Amo16g0146 466 PANTHER TRANSCRIPTION FACTOR TGA9 76 464 - -
Amo16g0146 466 MobiDBLite consensus disorder prediction 1 31 - -
Amo16g0146 466 MobiDBLite consensus disorder prediction 84 138 - -
Amo16g0146 466 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0146 Amo-Chr16 1972622 1977964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0146 51 465 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 62.138 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo16g0146 DOG1 9.4e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0146 16 1972622 1977964 Amo16g0146 16 1972622 1977964 ECH
Amo16g0146 16 1972622 1977964 Amo02g1997 02 65575639 65586987 PCT
Amo02g1997 02 65575639 65586987 Amo16g0146 16 1972622 1977964 PCT