Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0143 ATGAGTCTCCAAACCAATTTCTTATCTATTTTGGTTCTCTTGGCTGCAGTTTTTGCATCTTTGCATCTCATAAATCCAAATGAACAGTTCCTCAACATTTTCAAAGACTTCACTATAACGCCCTTCTCATCATCATCATCATATTCATATGCATGTTTGCAACTAACTTATATATGCATCTTCTTCAGAGGCCATCATCATAATCATCATCATAACAAGAAACACCCTGATGATGATGATAGTGGAAATGCTGGTTCCATTTGTGATGATTTTCCACCAGGGATTCCACCTCCAAGCACCAACACCACTTCTTATCTCTGTGTTGATCAAAAAGGTTGCTGCAATTTCACAACAGTACAAGCAGCCGTCAATGCAGTTCCAGATTTAAGCCAAAAAAGAACCATAATTTGGATTAACAAGGGCATATACTATGAGAAAGTAATGGTCCCAAGAACCAAAGCCAACATAACATTTCAAGGACAAGGTTACACTTCAACCGCAATTGCATGGAATGACACGGCAAAGTCAGCAAATGGCACATTCTATAGTGGTTCCGTACAAGTTTTTGCATCCAACTTCATTGCCAAGAACATAAGCTTCATGAACTTGGCACCAATGCCAAGTCCTGGAGTTGAAGGAGCACAAGCAGTAGCAATCAGAATATCAGGAGATCAAGCTGAATTCAAGGGATGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGTCGCCATTACTTTAAGGATTGCTATATCCAAGGCTCAATTGATTTCATATTTGGCGATGGAAGGTCCCTTTACGAGAATTGTGAAATAGTTTCTATAGCGAATCCAGTGCCACAAGGATACAGGAGCATAAATGGTGCAGTGACAGCTCATGGAAGAGTGTCCATGGATGATAACACAGGATTTGTGTTTGTGAACAGCACAATAGGAGGGAGTGGGAGAATATGGTTAGGAAGGGCATGGAGACCATACTCACGTGTTGTTTTTGTGTCAACAACAATGTCAGATATCATTGCCCCTGAAGGTTGGAACGATTTCAATGACCCTTCAAGGGATCAGACCATATTCTATGGAGAGTACAATTGCTCTGGTCCCGGAGCTAGCATGGCAATGAGGGCACCATATGTGCAGAGATTAAACGATACACAAGCTCTTCCATTCTTCAACATAACTTTTATTGATGGTGACCAATGGTTGGAAACTTACACACAATTAATAACCTAA 1236 0.4078 MSLQTNFLSILVLLAAVFASLHLINPNEQFLNIFKDFTITPFSSSSSYSYACLQLTYICIFFRGHHHNHHHNKKHPDDDDSGNAGSICDDFPPGIPPPSTNTTSYLCVDQKGCCNFTTVQAAVNAVPDLSQKRTIIWINKGIYYEKVMVPRTKANITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNISFMNLAPMPSPGVEGAQAVAIRISGDQAEFKGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGDGRSLYENCEIVSIANPVPQGYRSINGAVTAHGRVSMDDNTGFVFVNSTIGGSGRIWLGRAWRPYSRVVFVSTTMSDIIAPEGWNDFNDPSRDQTIFYGEYNCSGPGASMAMRAPYVQRLNDTQALPFFNITFIDGDQWLETYTQLIT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0143 411 Gene3D - 99 409 IPR012334 -
Amo16g0143 411 SUPERFAMILY Pectin lyase-like 104 404 IPR011050 -
Amo16g0143 411 PANTHER PECTINESTERASE 8-RELATED 11 406 - -
Amo16g0143 411 Pfam Pectinesterase 107 400 IPR000070 GO:0030599|GO:0042545
Amo16g0143 411 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 406 - -
Amo16g0143 411 ProSitePatterns Pectinesterase signature 2. 254 263 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0143 Amo-Chr16 1916650 1918285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0143 80 404 Carbohydrate Esterase AT1G05310 72.000 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0143 - - ahf:112696095 813.527