Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0141 ATGATTTGCGACTACCTCTACGTGCAACTCAACCTCGTTGTCTTCTCGTCGATTTTGATTTCTCAGGGTTTGGCATCTACTCCTTCACCCGAAGTATCAGCTCTGCAGGATCTATACAAGGCTTTAAACTACCCTCCTCAGCTCCAAGGTTGGAATGGTAGTGATCCATGCGAGGAGTCTTGGAAAGGAATCGCTTGTTCCGGGTCATCAGTTATACACATAAAAATTCGCGGACTGAACCTCACTGGAAATTTTGGAAGCATGCTCCGTGATCTTCAGAACTTGAAGGAACTTGATGTCAGTTCTAATAACATAGGTGGAGAAATACCATTTAGCTTACCCCGCAATGCAAGAAATATGAATTTAAGCCACAATCTCTTAAATGGACCCATTGGCGATGTATTTACTGGCCTGGATGATCTCAAAGAAATGGACCTTTCATACAACAATTTCTCAGGAGATCTTCCAAGATCGTTTGGTTCCTTGAAAAACCTTGATAAATTGTTTCTGCAGAATAACAGATTTACTGGATCAGTCACCTACCTGGCTGAACTTCCACTTTCATATCTGAACATCCAAGACAATCTGTTTAGTGGCATTCTTCCACTCCACTTTCACACCATACCGAATTTACGGATTGGAGGGAATAACTTCCATTCAGAGGACAGCTCTCCTCCCTGGCCTTTTCCTCTGGACACTGTACCAATAGCAGTTGAACGTAACTTTAGTCACCCACCCTCACACCCAGTTGTACATAACTTTAGTCACCCACCCATACACCCAGTTGAGCATAATACAACTGTGGCAAGTGCCATAAGGAACTATGCTCCTCCACCTCCCAAGGTTAGTCAGCACAAGGAAAAACATATGGGTCCCGGAGGAATAGCTTTTATGGTTGGTGCAGGAACACTAATGGCAACTGGTGTGGCACTCTTCGTTGCAATCCGTTTAAGTAAAAGGCGAGCACATATGCCAAGCTCAAAGAGCTTGGAAAGCAACCATTTCTCTTTACATTCTCATCCAAGCAGTGCAACAATAGAGGTCTCATCTACTGCTTTAGATGAGAGCCCACAAATCCCGGCTTTTGATCCTGCATCCCTCAGGGGTCCAATGGGATTGCCTCCTGTGCACCACAACAATATAGCCGACGCTTCAAGAAGAAGTTTTTCTAGAAGAAGCAGATCCACCGGAAGGACGAAAGTTTACACCGTATCAGAGCTTCAGTTTGCTACTAACAACTTCAATGAATGCAACGTTCTGGGAGAGGGCTCTCTTGGCACTGTATACAGAGCCAAATTTCCTGATGGCAAAATTCTGGCAGTGAAGAGCATAAACTTGGCGGGTGTGTCTTACAGAGAAGAGGAAAAGTTCTTGGATGTTATCTGCACGGCTTCCCGATTGAAGCACCCCAACATAGTAGCACTGAATGGCTACTGTTTGGAGCGGGGAAAGCATCTTCTTGTGTATGATTATGTTAGGAATTTGACTCTGCACGATGCTCTTCACAGAGACGTATACAAGCCTCTATCATGGATCCTCCGTCTCCGGATAGCTGTCGGCGTTGCTAACGCCCTCGACTACTTGCACTCAGCATTCTCCCCACCTGTTGCCCATGGAAACTTGAAGGCCGCCAATGTTCTTCTGGACGAGAATTTGATGCCTCGTCTTTCTGACTGTGGCTTGGCTGCTTTGAGACCACTGAGGAGCATTCAGGCTACCGAGGCTCCTATTGATGTAGGTTACCTGTCCCCTGACCATGGCAGAGCAGGAGGTAGCAGCAGAAAGAAAGATGTGTATGCCTTTGGGGTACTGCTTCTGGAAATGTTAACGGGAAGAAAAGCATTCGATGGTGGCAGGCCAATTGAGGAGCAGTACCTAGTGAAGTGGGCTTCACCCAGGCTTCACGATAACGCCAGTTTGGAGCAGATGGTGGATCCCGGTATGAAGAGGACATTTTCATCCAAGGCTCTTTCTCGTTATGCTGCTATCGTCTCACTCTGCATACAGCCTTCGAGGCATTTTCGTCCTCAGATGTCAGAAGTTGTGGACTCGCTTGTATCATTCTCGCAAAAGTTCAACATAGCAAAGGGCGGTGGTAGAGTAGGAGCAGATGGTGGCAACTTCATTGAACTTGAATCATTTGAGAAATCTTTCCGTTCAACAAACTCACGATTTATGGGTTCACCGGCGTTGAGCCATTTGAAAGTCATGGATATAGACCCTGCAGAACTTAGGTATTTGGAGGATGAGGATTCATCATTGATGAAAACTATTAAGGGTGCAACAACTGGTTTAATTTCTGGCACCATCTGGGGTACTGTTGTTGCCACCTGGAATGATGTTCCTCGTGTTGAGAGAAACGTTGCTCTTCCAGGCCTGATAAGAACTTTCAAGATGATGGGCAACTATGGATTGACCTTTGCTGCCATAGGAGGAGTTTACATCGGTGTTGAGCAGTTGGTGCAGAACGCTAGGATGAAGAGGGATCTTGTCAATGGTGCTGTAGGTGGATTTGTTGCTGGTGCAACTGTTCTGGGTTATAAAGGGAGGAGCATCAAAACTGCAATTCAGGCTGGGTCAGCATTGGCATTCACCTCTGCATTTATTGATTTCGGAGGTCAGAGAATAAAACATGATTCTCATAAGGAGTATGCTGCTTACACCACAAAGAAAAGACCCAATGCTGAATCTGCTGATGCGTAA 2703 0.458 MICDYLYVQLNLVVFSSILISQGLASTPSPEVSALQDLYKALNYPPQLQGWNGSDPCEESWKGIACSGSSVIHIKIRGLNLTGNFGSMLRDLQNLKELDVSSNNIGGEIPFSLPRNARNMNLSHNLLNGPIGDVFTGLDDLKEMDLSYNNFSGDLPRSFGSLKNLDKLFLQNNRFTGSVTYLAELPLSYLNIQDNLFSGILPLHFHTIPNLRIGGNNFHSEDSSPPWPFPLDTVPIAVERNFSHPPSHPVVHNFSHPPIHPVEHNTTVASAIRNYAPPPPKVSQHKEKHMGPGGIAFMVGAGTLMATGVALFVAIRLSKRRAHMPSSKSLESNHFSLHSHPSSATIEVSSTALDESPQIPAFDPASLRGPMGLPPVHHNNIADASRRSFSRRSRSTGRTKVYTVSELQFATNNFNECNVLGEGSLGTVYRAKFPDGKILAVKSINLAGVSYREEEKFLDVICTASRLKHPNIVALNGYCLERGKHLLVYDYVRNLTLHDALHRDVYKPLSWILRLRIAVGVANALDYLHSAFSPPVAHGNLKAANVLLDENLMPRLSDCGLAALRPLRSIQATEAPIDVGYLSPDHGRAGGSSRKKDVYAFGVLLLEMLTGRKAFDGGRPIEEQYLVKWASPRLHDNASLEQMVDPGMKRTFSSKALSRYAAIVSLCIQPSRHFRPQMSEVVDSLVSFSQKFNIAKGGGRVGADGGNFIELESFEKSFRSTNSRFMGSPALSHLKVMDIDPAELRYLEDEDSSLMKTIKGATTGLISGTIWGTVVATWNDVPRVERNVALPGLIRTFKMMGNYGLTFAAIGGVYIGVEQLVQNARMKRDLVNGAVGGFVAGATVLGYKGRSIKTAIQAGSALAFTSAFIDFGGQRIKHDSHKEYAAYTTKKRPNAESADA* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0141 900 SUPERFAMILY L domain-like 31 212 - -
Amo16g0141 900 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Amo16g0141 900 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 705 - -
Amo16g0141 900 ProSiteProfiles Protein kinase domain profile. 414 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0141 900 Gene3D Phosphorylase Kinase; domain 1 378 491 - -
Amo16g0141 900 PANTHER OS01G0253100 PROTEIN 2 705 IPR045271 GO:0004714|GO:0006468
Amo16g0141 900 Gene3D Transferase(Phosphotransferase) domain 1 493 697 - -
Amo16g0141 900 Pfam Tim17/Tim22/Tim23/Pmp24 family 756 864 - -
Amo16g0141 900 Pfam Protein tyrosine and serine/threonine kinase 418 685 IPR001245 GO:0004672|GO:0006468
Amo16g0141 900 Gene3D Ribonuclease Inhibitor 28 234 IPR032675 -
Amo16g0141 900 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Amo16g0141 900 SUPERFAMILY Protein kinase-like (PK-like) 389 685 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0141 Amo-Chr16 1886871 1893705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0141 10 734 Strubbelig Receptor Gene Family AT5G06820 48.617 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Amo16g0141 PK_Tyr_Ser-Thr 2.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0141 - - gmx:100775254 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0141 16 1886871 1893705 Amo16g0141 16 1886871 1893705 ECH
Amo16g0141 16 1886871 1893705 Amo02g2004 02 65874664 65879575 PCT
Amo02g2004 02 65874664 65879575 Amo16g0141 16 1886871 1893705 PCT