Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0139 ATGGAAGATTTGAAGAAGAGAAAGCTGGAGGAGGCTGCAAATGGTGAGTGTCCCTCAAAGGAAGAGCTTCGCGTCCTCATTGAACCCCTCCCTAAAGCTCAGCTCATCGACCTTCTCACTAAATTAGGGTCTCAATATCCTTCAATTGCACAAGAAATAAAAAGTATTGCGAGTGTTGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGAATACCACGTCAGAAACCTTGCGTGTTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGGGCTGTCATCCATGATAAGAATACAGGAAAATCTCGTGGCTATGGTTTTATCACTTATAAGTATATGGAATCAACTCAGCAAGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTGGCTTGTGAAGGACTTAGTGGATCAAGTAGTGCTCCTGATCTTGCCCAGAGGAAGCTTTATATTGGTAGCTTATCGCCGGAAGTCACGAGTGAAATGCTGCTTAACTATTTTTCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTCGTAACATACAAGACATCAGAAGCTGCAAAGAAGGCCATCGATGACCAAGAAAAGACTCTTGGGGGGAGGAATATAATGGTAAAATATGCTGATTCGCACAAGAGTAAAACTAGCCAGGCATCATTTTCTCCAGGAGTGGTTCCAATGGCAGCCTTACCTATGGCCTCAGGATATGTTCAACCTGGAAAAACTCATATTGGTACTACCCTGCCAGTTGGTTACACTTACCCACAAACTATAGCATCATACTCTTCTTATCAAAGCCCTACCACTGTACCTTCTCCTTATGCAGCTCAAGGACATGGTCCTTATCCAACTTCTTTTACAAAGAAAGATCAACTTGGTATCCCAAACCAACCTGTGGCAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1002 0.4271 MEDLKKRKLEEAANGECPSKEELRVLIEPLPKAQLIDLLTKLGSQYPSIAQEIKSIASVDPVHRKLFVRGLAWNTTSETLRVAFQEHGEIEEGAVIHDKNTGKSRGYGFITYKYMESTQQALRAPSKLIDGRLAVCNLACEGLSGSSSAPDLAQRKLYIGSLSPEVTSEMLLNYFSRHGEIEEGSVAYDKDTNESRGFGFVTYKTSEAAKKAIDDQEKTLGGRNIMVKYADSHKSKTSQASFSPGVVPMAALPMASGYVQPGKTHIGTTLPVGYTYPQTIASYSSYQSPTTVPSPYAAQGHGPYPTSFTKKDQLGIPNQPVAMNNYPYYYPKQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0139 333 SMART rrm1_1 65 137 IPR000504 GO:0003723
Amo16g0139 333 SMART rrm1_1 156 228 IPR000504 GO:0003723
Amo16g0139 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Amo16g0139 333 Gene3D - 142 244 IPR012677 -
Amo16g0139 333 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 164 IPR000504 GO:0003723
Amo16g0139 333 SUPERFAMILY RNA-binding domain, RBD 51 141 IPR035979 GO:0003676
Amo16g0139 333 Gene3D - 56 141 IPR012677 -
Amo16g0139 333 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 15 333 - -
Amo16g0139 333 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 15 333 - -
Amo16g0139 333 CDD RRM_RBM24_RBM38_like 64 139 - -
Amo16g0139 333 SUPERFAMILY RNA-binding domain, RBD 151 243 IPR035979 GO:0003676
Amo16g0139 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Amo16g0139 333 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0139 Amo-Chr16 1866199 1868626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0139 147 262 C2H2 Transcription Factor Family AT2G19380 33.051 3.20e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0139 K12741 - gmx:100776344 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0139 16 1866199 1868626 Amo16g0139 16 1866199 1868626 ECH