Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0135 ATGTTGTGCTGTGGAGGTGCAGAGGAGGAGAGCAGTGGCCCGCCTGCCAACCAAGCCACCACTGCACCGCCTCGAGGGGGAAACACATACGGTGGAGGAGGCAATGACAGAGGAGAGCCAAGGGGCAATGCTGCCAAGACTGGTGCTCCACAGAAAGTGCTGCCAATTGAGATTCCATCTATGCCATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTTCCAAGTCTTTCATTGGAGAAGGTTCCTATGGACGGGTTTACTATGCAAAATTGGATGATGGAACAGATGCTGCAATCAAGAAGCTGGATACCAGTTCTTCAACAGAATCTGACACTGATTTCACAGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATGATAATTTTGTGGAGATGATTGGATACTGTCTAGAGGCAAATAACAAAATCTTGATTTATCAATATGCAAGTCTTGGTTCTTTGCATGACATATTACACGGAAGGAAGGGTGTACAAGGGGCTGAACCAGGTCCAGTTTTAAGCTGGAATCAGAGAGCGAAAATCGCGTTTGGTGCGGCAAAAGGACTTGAGTATCTTCATGAAAAGTGTCAGCCTTCTATAGTTCACCGTGATGTTAGATCCAGCAATGTATTACTCTTCAATGACTATGACGCCAAGATTGCAGATTTCAGCTTGACAAACCAGTCTTCTGACACCGCGGCTCGCCTACATTCAACAAGAGTGTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCCTTCAATTATAA 774 0.4522 MLCCGGAEEESSGPPANQATTAPPRGGNTYGGGGNDRGEPRGNAAKTGAPQKVLPIEIPSMPLDELNRLTGNFGSKSFIGEGSYGRVYYAKLDDGTDAAIKKLDTSSSTESDTDFTAQLSVVSRLKHDNFVEMIGYCLEANNKILIYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKCQPSIVHRDVRSSNVLLFNDYDAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYALQL* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0135 257 Gene3D Transferase(Phosphotransferase) domain 1 151 257 - -
Amo16g0135 257 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Amo16g0135 257 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Amo16g0135 257 SMART tyrkin_6 73 257 IPR020635 GO:0004713|GO:0006468
Amo16g0135 257 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 255 - -
Amo16g0135 257 Gene3D Phosphorylase Kinase; domain 1 41 149 - -
Amo16g0135 257 ProSiteProfiles Protein kinase domain profile. 73 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo16g0135 257 Pfam Protein tyrosine and serine/threonine kinase 78 253 IPR001245 GO:0004672|GO:0006468
Amo16g0135 257 MobiDBLite consensus disorder prediction 1 51 - -
Amo16g0135 257 PANTHER OS03G0226300 PROTEIN 1 255 - -
Amo16g0135 257 SUPERFAMILY Protein kinase-like (PK-like) 53 256 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0135 Amo-Chr16 1739284 1741076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0135 27 254 Trihelix Transcription Factor Family AT1G70460 40.351 1.84e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Amo16g0135 PK_Tyr_Ser-Thr 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0135 - - gmx:100786291 447.203