Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0128 CTCTCTAAGGAACAATCTGCGTTTCTTGAAGAGAGCTTCAAAGAACACACCACCCTTAATCCTAAGCAGAAACTGGCTCTTGCGAAACAGTTAAACCTTCGTCCCCGTCAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAGGTGGATTGCGAGTACTTGAAGAGGTGCTGTGACACCTTAACTGAAGAGAATCGGAGGTTGCAGAAGGAGCTTCAAGAGCTGAGGGCATTAAAGACTTCTCAACCCTTCTACATGCAGCTTCCGGCCACCACTCTCACAATGTGCCCTTCATGTGAAAGGGTCGCCACCAACACCGCCGCTAATAACAATGACGCTTCTCAGATTGCTTCCGCTTTGTCTCTTAGTAACAAGCCCAGAATCTTGCCATTTCCTAATACTCAGGCCCATCCTCCTCCGGCCCAAAAGGCCCATCAATGA 462 0.4827 LSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAANNNDASQIASALSLSNKPRILPFPNTQAHPPPAQKAHQ* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0128 153 ProSitePatterns 'Homeobox' domain signature. 27 50 IPR017970 GO:0000981|GO:0006355
Amo16g0128 153 PANTHER - 1 122 - -
Amo16g0128 153 CDD homeodomain 1 53 IPR001356 GO:0003677
Amo16g0128 153 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 122 - -
Amo16g0128 153 Pfam Homeodomain 2 50 IPR001356 GO:0003677
Amo16g0128 153 SMART HOX_1 1 56 IPR001356 GO:0003677
Amo16g0128 153 Gene3D - 1 50 - -
Amo16g0128 153 SUPERFAMILY Homeodomain-like 2 61 IPR009057 -
Amo16g0128 153 SMART halz 52 95 IPR003106 GO:0006355|GO:0043565
Amo16g0128 153 ProSiteProfiles 'Homeobox' domain profile. 1 52 IPR001356 GO:0003677
Amo16g0128 153 MobiDBLite consensus disorder prediction 134 153 - -
Amo16g0128 153 Coils Coil 58 88 - -
Amo16g0128 153 Pfam Homeobox associated leucine zipper 52 86 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0128 Amo-Chr16 1643889 1644786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0128 1 143 Homeobox Transcription Factor Family AT4G37790 67.347 3.02e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo16g0128 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0128 K09338 - gmx:100779138 233.032