Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0127 ATGGCGGAAGAGACTTCGGATGCTATGAACCTTGATTTGAATCTGGGTCCAGGCCCTGACCCAACCATATCAACTGATGGTCTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGAGAATCAGTGAAGCTGTGAGGCTCAGGGGGAGGCAACGGTGGAGGTGGCGGCATATCCCTATACCTCCTCCCGAAGTTCCGCTTCACCTTCCCCCGGAAGCCCCTAGGCAATTTCATATACCCCCTGAAGCAAGGAACATCTCAATGGAATTGAACCAGTTTTTGGTTAATTCTGGTCAAGGGGGTGCATTGCAGGCTGGTGAAGGCAGTGTGGCAGCTGAGGAAAGGACGGAGGTGGCACCAAAAGCTTGTGAGAACAACAATGGTGTTATGGATGATGCGGCTTTGGAGAAGAAGGATGATGATGAGAAAAGTGGTGGCACTGATGGGGACTTCTTTGATTGTAATATCTGTTTAGACCTGGCCAGGGATCCTGTTGTGACTTGCTGTGGTCATTTGTTCTGTTGGCCGTGCCTGTATCGATGGCTGCATCTGCACTCGGATGCCAAGGAGTGTCCGGTTTGTAAAGGAGAGGTGACTTTCAAGAATGTTACACCAATATATGGTCGTGGAAATAGTGTCCGCACTGCTGAGGACGATCCCACCCTGAAAGTCCCTCTGAGGCCCCCAGCCAGGCGTGTCGAGAGTCTGAGACAAACCATTCAGAGAACTGCATTTGCACTCCCTGTGGAAGAGATGATTCGTCGTCTTGGAAGCAGGATTGATCTCACTAGGGATTTACTTCACCCGCATGAACCAGACAATGCCCGTGAAACAGCAGAAAGAACTAGTTCATTGCTAAGTAGGTTTTTGACATCTCGAGGTATAAGGAGAGAGCAAAACATTGGGGCTCCTGCAGATGACGTAGTGGGTTTGGCCCAATCCCTTCTACTTAGAAGAACACAGTCACATAGGGCAACACTTTCTACCCTTTCATCAGCACTGAATTCTGCTGAAAGGCTAGTTGAGGCATATTTCCGTAGCCATCCATTAGGTAGAAACCAAGAGCAGCCTCCTCCAGTTGATGATAGAGATTCCTTTTCAAGCATCGGTGCCGTCATCAATTCAGAGAGTCAGGTGGACACTGCTGTAGAAATTGATTCCATGTGGAGACTCTCGCGCTCCAAGGCGCAGACGTTTGAACTGATAGAAGTTTTAGAGCAAAACTATCTCATGGGGAATGGTCAACGGCAATTTAAAGCTTCTGTCCTTGTTGCCTTGTCAATAATGCAGATAGACACCACCGATTGCAGCCACAATCTATCGTTGAATTGGGAAAGAGAGGCAAGTGGCAATGGGTCCTTTACTCTACTCATGAGAAGAAACCTTAGAGTTGAGGGTAGGAAGTATGGAAGTGTGAGTGAAGAAGAAGGGAAGAGTGGAAACAAAATGATTAAACACACGGATAGATTTTTCACTTATTACTCATTATATCTAGTTATGTAG 1503 0.4737 MAEETSDAMNLDLNLGPGPDPTISTDGLNLDDWIEEPLQRISEAVRLRGRQRWRWRHIPIPPPEVPLHLPPEAPRQFHIPPEARNISMELNQFLVNSGQGGALQAGEGSVAAEERTEVAPKACENNNGVMDDAALEKKDDDEKSGGTDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTFKNVTPIYGRGNSVRTAEDDPTLKVPLRPPARRVESLRQTIQRTAFALPVEEMIRRLGSRIDLTRDLLHPHEPDNARETAERTSSLLSRFLTSRGIRREQNIGAPADDVVGLAQSLLLRRTQSHRATLSTLSSALNSAERLVEAYFRSHPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMWRLSRSKAQTFELIEVLEQNYLMGNGQRQFKASVLVALSIMQIDTTDCSHNLSLNWEREASGNGSFTLLMRRNLRVEGRKYGSVSEEEGKSGNKMIKHTDRFFTYYSLYLVM* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0127 500 Pfam Zinc finger, C3HC4 type (RING finger) 154 194 - -
Amo16g0127 500 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Amo16g0127 500 CDD RING-HC_AtRMA_like 152 196 - -
Amo16g0127 500 MobiDBLite consensus disorder prediction 1 20 - -
Amo16g0127 500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 228 IPR013083 -
Amo16g0127 500 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 398 IPR045103 GO:0005783|GO:0006511|GO:0061630
Amo16g0127 500 SMART ring_2 154 194 IPR001841 -
Amo16g0127 500 ProSitePatterns Zinc finger RING-type signature. 169 178 IPR017907 -
Amo16g0127 500 SUPERFAMILY RING/U-box 150 208 - -
Amo16g0127 500 MobiDBLite consensus disorder prediction 124 144 - -
Amo16g0127 500 PANTHER OS01G0830200 PROTEIN 18 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0127 Amo-Chr16 1620798 1626377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0127 1 388 C3H Transcription Factor Family AT3G58030 51.522 6.07e-126 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0127 K10666 - gmx:100811099 575.474